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可扩展的和大规模并行的蒙特卡罗光子传输模拟,用于异构计算平台。

Scalable and massively parallel Monte Carlo photon transport simulations for heterogeneous computing platforms.

机构信息

Northeastern University, Department of Electrical and Computer Engineering, Boston, Massachusetts, United States.

Northeastern University, Department of Bioengineering, Boston, Massachusetts, United States.

出版信息

J Biomed Opt. 2018 Jan;23(1):1-4. doi: 10.1117/1.JBO.23.1.010504.

DOI:10.1117/1.JBO.23.1.010504
PMID:29374404
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5785911/
Abstract

We present a highly scalable Monte Carlo (MC) three-dimensional photon transport simulation platform designed for heterogeneous computing systems. Through the development of a massively parallel MC algorithm using the Open Computing Language framework, this research extends our existing graphics processing unit (GPU)-accelerated MC technique to a highly scalable vendor-independent heterogeneous computing environment, achieving significantly improved performance and software portability. A number of parallel computing techniques are investigated to achieve portable performance over a wide range of computing hardware. Furthermore, multiple thread-level and device-level load-balancing strategies are developed to obtain efficient simulations using multiple central processing units and GPUs.

摘要

我们提出了一种高度可扩展的蒙特卡罗(MC)三维光子传输模拟平台,专为异构计算系统设计。通过使用 Open Computing Language 框架开发大规模并行 MC 算法,本研究将现有的 GPU 加速 MC 技术扩展到高度可扩展的与供应商无关的异构计算环境中,显著提高了性能和软件可移植性。研究了许多并行计算技术,以在广泛的计算硬件上实现可移植的性能。此外,开发了多种线程级和设备级负载平衡策略,以使用多个中央处理单元和 GPU 获得有效的模拟。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89d3/5785911/e390484337d0/JBO-023-010504-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89d3/5785911/7a84b3f18589/JBO-023-010504-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89d3/5785911/335e60c35800/JBO-023-010504-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89d3/5785911/e390484337d0/JBO-023-010504-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89d3/5785911/7a84b3f18589/JBO-023-010504-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89d3/5785911/335e60c35800/JBO-023-010504-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89d3/5785911/e390484337d0/JBO-023-010504-g003.jpg

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