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一个用于从异构真实世界证据中检测和组合药物安全信号的 MCEM 框架。

An MCEM Framework for Drug Safety Signal Detection and Combination from Heterogeneous Real World Evidence.

机构信息

AI for Healthcare, IBM Research,, Cambridge, USA.

Center for Computational Health, IBM T. J. Watson Research Center, Yorktown Heights, USA.

出版信息

Sci Rep. 2018 Jan 29;8(1):1806. doi: 10.1038/s41598-018-19979-7.

DOI:10.1038/s41598-018-19979-7
PMID:29379048
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5789130/
Abstract

Delayed drug safety insights can impact patients, pharmaceutical companies, and the whole society. Post-market drug safety surveillance plays a critical role in providing drug safety insights, where real world evidence such as spontaneous reporting systems (SRS) and a series of disproportional analysis serve as a cornerstone of proactive and predictive drug safety surveillance. However, they still face several challenges including concomitant drugs confounders, rare adverse drug reaction (ADR) detection, data bias, and the under-reporting issue. In this paper, we are developing a new framework that detects improved drug safety signals from multiple data sources via Monte Carlo Expectation-Maximization (MCEM) and signal combination. In MCEM procedure, we propose a new sampling approach to generate more accurate SRS signals for each ADR through iteratively down-weighting their associations with irrelevant drugs in case reports. While in signal combination step, we adopt Bayesian hierarchical model and propose a new summary statistic such that SRS signals can be combined with signals derived from other observational health data allowing for related signals to borrow statistical support with adjustment of data reliability. They combined effectively alleviate the concomitant confounders, data bias, rare ADR and under-reporting issues. Experimental results demonstrated the effectiveness and usefulness of the proposed framework.

摘要

药物安全性信息的延迟可能会影响患者、制药公司和整个社会。上市后药物安全性监测在提供药物安全性信息方面发挥着关键作用,真实世界证据(如自发报告系统(SRS)和一系列比例失调分析)是主动和预测性药物安全性监测的基石。然而,它们仍然面临着一些挑战,包括伴随药物混杂因素、罕见药物不良反应(ADR)的检测、数据偏差和报告不足的问题。在本文中,我们正在开发一种新的框架,通过蒙特卡罗期望最大化(MCEM)和信号组合,从多个数据源中检测改进的药物安全性信号。在 MCEM 过程中,我们提出了一种新的抽样方法,通过迭代地对病例报告中与无关药物的关联进行降权,为每个 ADR 生成更准确的 SRS 信号。而在信号组合步骤中,我们采用贝叶斯层次模型,并提出了一种新的汇总统计量,使得 SRS 信号可以与其他观察性健康数据衍生的信号相结合,允许相关信号通过调整数据可靠性来借用统计支持。它们有效地缓解了伴随混杂因素、数据偏差、罕见 ADR 和报告不足的问题。实验结果证明了所提出框架的有效性和实用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d62/5789130/5d7fc81730a7/41598_2018_19979_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d62/5789130/fb26e19c229d/41598_2018_19979_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d62/5789130/47a815eece28/41598_2018_19979_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d62/5789130/4f495b0558ed/41598_2018_19979_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d62/5789130/5d7fc81730a7/41598_2018_19979_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d62/5789130/fb26e19c229d/41598_2018_19979_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d62/5789130/47a815eece28/41598_2018_19979_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d62/5789130/4f495b0558ed/41598_2018_19979_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d62/5789130/5d7fc81730a7/41598_2018_19979_Fig4_HTML.jpg

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Evidence of Misclassification of Drug-Event Associations Classified as Gold Standard 'Negative Controls' by the Observational Medical Outcomes Partnership (OMOP).
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iADRGSE: A Graph-Embedding and Self-Attention Encoding for Identifying Adverse Drug Reaction in the Earlier Phase of Drug Development.iADRGSE:一种用于在药物研发早期识别药物不良反应的图嵌入和自注意力编码方法。
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