Bioethics Unit, Office of the President, Istituto Superiore di Sanità, Rome, Italy.
National Center for Rare Diseases, Istituto Superiore di Sanità, Rome, Italy.
Eur J Hum Genet. 2018 May;26(5):631-643. doi: 10.1038/s41431-017-0085-z. Epub 2018 Feb 2.
In rare disease (RD) research, there is a huge need to systematically collect biomaterials, phenotypic, and genomic data in a standardized way and to make them findable, accessible, interoperable and reusable (FAIR). RD-Connect is a 6 years global infrastructure project initiated in November 2012 that links genomic data with patient registries, biobanks, and clinical bioinformatics tools to create a central research resource for RDs. Here, we present RD-Connect Registry & Biobank Finder, a tool that helps RD researchers to find RD biobanks and registries and provide information on the availability and accessibility of content in each database. The finder concentrates information that is currently sparse on different repositories (inventories, websites, scientific journals, technical reports, etc.), including aggregated data and metadata from participating databases. Aggregated data provided by the finder, if appropriately checked, can be used by researchers who are trying to estimate the prevalence of a RD, to organize a clinical trial on a RD, or to estimate the volume of patients seen by different clinical centers. The finder is also a portal to other RD-Connect tools, providing a link to the RD-Connect Sample Catalogue, a large inventory of RD biological samples available in participating biobanks for RD research. There are several kinds of users and potential uses for the RD-Connect Registry & Biobank Finder, including researchers collaborating with academia and the industry, dealing with the questions of basic, translational, and/or clinical research. As of November 2017, the finder is populated with aggregated data for 222 registries and 21 biobanks.
在罕见病(RD)研究中,我们需要以标准化的方式系统地收集生物材料、表型和基因组数据,并使其具有可发现性、可访问性、互操作性和可重用性(FAIR)。RD-Connect 是一个全球基础设施项目,于 2012 年 11 月启动,历时 6 年,它将基因组数据与患者登记处、生物库和临床生物信息学工具相链接,为 RD 创建一个中央研究资源。在这里,我们介绍 RD-Connect 登记处和生物库查询工具,这是一个帮助 RD 研究人员查找 RD 生物库和登记处的工具,并提供每个数据库中内容的可用性和可访问性的信息。查询工具集中了目前不同存储库(清单、网站、科学期刊、技术报告等)中稀疏的信息,包括来自参与数据库的聚合数据和元数据。查询工具提供的聚合数据,如果经过适当检查,可以供正在尝试估计 RD 患病率、组织 RD 临床试验或估计不同临床中心所看到的患者数量的研究人员使用。查询工具也是 RD-Connect 其他工具的门户,提供了对 RD-Connect 样本目录的链接,该目录是参与生物库中可用于 RD 研究的大量 RD 生物样本清单。RD-Connect 登记处和生物库查询工具的用户和潜在用途有几种,包括与学术界和工业界合作的研究人员,他们涉及基础、转化和/或临床研究的问题。截至 2017 年 11 月,查询工具中已包含 222 个登记处和 21 个生物库的聚合数据。