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借助SERDIF框架在弹性环境中实现罕见病的数据关联。

Enabling data linkages for rare diseases in a resilient environment with the SERDIF framework.

作者信息

Navarro-Gallinad Albert, Orlandi Fabrizio, Scott Jennifer, Havyarimana Enock, Basu Neil, Little Mark A, O'Sullivan Declan

机构信息

ADAPT Centre for Digital Content, School of Computer Science and Statistics, Trinity College Dublin, Dublin, Ireland.

Health Data Science Centre, Fondazione Human Technopole, Milan, Italy.

出版信息

NPJ Digit Med. 2024 Oct 4;7(1):274. doi: 10.1038/s41746-024-01267-6.

Abstract

Environmental factors amplified by climate change contribute significantly to the global burden of disease, disproportionately impacting vulnerable populations, such as individuals with rare diseases. Researchers require innovative, dynamic data linkage methods to enable the development of risk prediction models, particularly for diseases like vasculitis with unknown aetiology but potential environmental triggers. In response, we present the Semantic Environmental and Rare Disease Data Integration Framework (SERDIF). SERDIF was evaluated with researchers studying climate-related health hazards of vasculitis disease activity across European countries (N = 10, N = 17, N = 23). Usability metrics consistently improved, indicating SERDIF's effectiveness in linking complex environmental and health datasets. Furthermore, SERDIF-enabled epidemiologists to study environmental factors in a pregnancy cohort in Lombardy, showcasing its versatility beyond rare diseases. This framework offers for the first time a user-friendly, FAIR-compliant design for environment-health data linkage with export capabilities enabling data analysis to mitigate health risks posed by climate change.

摘要

气候变化加剧的环境因素对全球疾病负担有重大影响,对弱势群体(如罕见病患者)的影响尤为严重。研究人员需要创新的、动态的数据链接方法来开发风险预测模型,特别是针对病因不明但可能有环境触发因素的血管炎等疾病。作为回应,我们提出了语义环境与罕见病数据集成框架(SERDIF)。我们与研究欧洲各国血管炎疾病活动的气候相关健康危害的研究人员一起对SERDIF进行了评估(N = 10,N = 17,N = 23)。可用性指标持续改善,表明SERDIF在链接复杂的环境和健康数据集方面的有效性。此外,SERDIF使流行病学家能够在伦巴第的一个妊娠队列中研究环境因素,展示了其在罕见病之外的通用性。该框架首次为环境与健康数据链接提供了一个用户友好、符合FAIR原则的设计,并具备导出功能,能够进行数据分析以减轻气候变化带来的健康风险。

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