从印度班公湖分离出的耐冷兼耐盐细菌嗜冷栖热袍菌属菌株ISTPL4的基因组序列草图
Draft Genome Sequence of sp. Strain ISTPL4, a Psychrotolerant and Halotolerant Bacterium Isolated from Pangong Lake, India.
作者信息
Mishra Arti, Jha Gopaljee, Thakur Indu Shekhar
机构信息
School of Environmental Sciences, Jawaharlal Nehru University, New Delhi, India.
National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India.
出版信息
Genome Announc. 2018 Feb 1;6(5):e01533-17. doi: 10.1128/genomeA.01533-17.
Abstract
sp. strain ISTPL4, a psychrotolerant bacterium, was isolated from brackish water of the high-altitude Pangong Lake in India. In this study, we report its draft genome sequence, which contains 3,529,629 bp with a G+C content of 69.84%. The genome is enriched in genes associated with cold adaptation and plant growth promotion.
摘要
菌株ISTPL4是一种耐冷细菌，从印度高海拔班公湖的微咸水中分离得到。在本研究中，我们报告了其基因组草图序列，该序列包含3529629个碱基对，G+C含量为69.84%。该基因组富含与冷适应和促进植物生长相关的基因。
相似文献
1
Draft Genome Sequence of sp. Strain ISTPL4, a Psychrotolerant and Halotolerant Bacterium Isolated from Pangong Lake, India.
Genome Announc. 2018 Feb 1;6(5):e01533-17. doi: 10.1128/genomeA.01533-17.
2
Degradation and detoxification of phenanthrene by actinobacterium Zhihengliuella sp. ISTPL4.
Environ Sci Pollut Res Int. 2020 Aug;27(22):27256-27267. doi: 10.1007/s11356-019-05478-3. Epub 2019 Jun 6.
3
Genome sequence of Idiomarina sp. strain A28L, isolated from Pangong Lake, India.
J Bacteriol. 2011 Oct;193(20):5875-6. doi: 10.1128/JB.05648-11. Epub 2011 Jul 8.
4
Genome sequence of Rheinheimera sp. strain A13L, isolated from Pangong Lake, India.
J Bacteriol. 2011 Oct;193(20):5873-4. doi: 10.1128/JB.05636-11. Epub 2011 Jul 8.
5
Interaction studies of and sp. ISTPL4 and their synergistic role in growth promotion in rice.
Front Plant Sci. 2023 May 24;14:1155715. doi: 10.3389/fpls.2023.1155715. eCollection 2023.
6
First high quality draft genome sequence of a plant growth promoting and cold active enzyme producing psychrotrophic Arthrobacter agilis strain L77.
Stand Genomic Sci. 2016 Aug 26;11(1):54. doi: 10.1186/s40793-016-0176-4. eCollection 2016.
7
A comparative metagenomic study reveals microbial diversity and their role in the biogeochemical cycling of Pangong lake.
Sci Total Environ. 2020 Aug 20;731:139074. doi: 10.1016/j.scitotenv.2020.139074. Epub 2020 Apr 28.
8
Draft Genome Sequence of the Anoxygenic Phototrophic Bacterium sp. Strain Az07, Isolated from a Brackish Canal.
Microbiol Resour Announc. 2021 Sep 23;10(38):e0058521. doi: 10.1128/MRA.00585-21.
9
Fungal-Bacterial Combinations in Plant Health under Stress: Physiological and Biochemical Characteristics of the Filamentous Fungus and the Actinobacterium sp. ISTPL4 under In Vitro Arsenic Stress.
Microorganisms. 2024 Feb 17;12(2):405. doi: 10.3390/microorganisms12020405.
10
Draft Genome Sequence of Nitrosospira sp. Strain APG3, a Psychrotolerant Ammonia-Oxidizing Bacterium Isolated from Sandy Lake Sediment.
Genome Announc. 2013 Nov 7;1(6):e00930-13. doi: 10.1128/genomeA.00930-13.
引用本文的文献
1
Synergistic impact of and sp. ISTPL4 on the mitigation of arsenic stress in rice.
Front Microbiol. 2024 May 29;15:1374303. doi: 10.3389/fmicb.2024.1374303. eCollection 2024.
2
Fungal-Bacterial Combinations in Plant Health under Stress: Physiological and Biochemical Characteristics of the Filamentous Fungus and the Actinobacterium sp. ISTPL4 under In Vitro Arsenic Stress.
Microorganisms. 2024 Feb 17;12(2):405. doi: 10.3390/microorganisms12020405.
3
Valorisation of hydrothermal liquefaction wastewater in agriculture: effects on tobacco plants and rhizosphere microbiota.
Front Plant Sci. 2023 Jun 5;14:1180061. doi: 10.3389/fpls.2023.1180061. eCollection 2023.
4
Novel Cesium Resistance Mechanism of Alkaliphilic Bacterium Isolated From Jumping Spider Ground Extract.
Front Microbiol. 2022 Mar 8;13:841821. doi: 10.3389/fmicb.2022.841821. eCollection 2022.
5
Environmental DNA and RNA as Records of Human Exposome, Including Biotic/Abiotic Exposures and Its Implications in the Assessment of the Role of Environment in Chronic Diseases.
Int J Mol Sci. 2020 Jul 10;21(14):4879. doi: 10.3390/ijms21144879.
本文引用的文献
1
Zhihengliuella somnathii sp. nov., a halotolerant actinobacterium from the rhizosphere of a halophyte Salicornia brachiata.
Int J Syst Evol Microbiol. 2015 Sep;65(9):3137-3142. doi: 10.1099/ijsem.0.000391. Epub 2015 Jun 25.
2
Prokka: rapid prokaryotic genome annotation.
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
3
Toward almost closed genomes with GapFiller.
Genome Biol. 2012 Jun 25;13(6):R56. doi: 10.1186/gb-2012-13-6-r56.
4
Biotechnological uses of enzymes from psychrophiles.
Microb Biotechnol. 2011 Jul;4(4):449-60. doi: 10.1111/j.1751-7915.2011.00258.x. Epub 2011 Mar 24.
5
Scaffolding pre-assembled contigs using SSPACE.
Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12.
6
Isolation, characterization, and use for plant growth promotion under salt stress, of ACC deaminase-producing halotolerant bacteria derived from coastal soil.
J Microbiol Biotechnol. 2010 Nov;20(11):1577-84. doi: 10.4014/jmb.1007.07011.
7
CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes.
Nucleic Acids Res. 2009 Jul;37(Web Server issue):W174-8. doi: 10.1093/nar/gkp278. Epub 2009 Apr 26.
8
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
Zotero 插件