利用木糖且在生化和生物燃料生产中有潜在应用的基因组草图组装
Draft Genome Assemblies of Xylose-Utilizing and with Potential Application in Biochemical and Biofuel Production.
作者信息
Somani Abhishek, Smith Daniel, Hegarty Matthew, Fernandez-Fuentes Narcis, Ravella Sreenivas R, Gallagher Joe A, Bryant David N
机构信息
Institute of Biological, Environmental & Rural Sciences, Aberystwyth University, Aberystwyth, United Kingdom.
Institute of Biological, Environmental & Rural Sciences, Aberystwyth University, Aberystwyth, United Kingdom
出版信息
Genome Announc. 2018 Feb 15;6(7):e01594-17. doi: 10.1128/genomeA.01594-17.
Abstract
Non- species are growing in prominence in industrial biotechnology due to their ability to utilize hemicellulose. Here, we present the draft genome sequences of an inhibitor-tolerant strain (Y6604) and NCAIM Y01308.
摘要
由于非物种能够利用半纤维素，它们在工业生物技术中越来越重要。在此，我们展示了一株耐抑制剂菌株（Y6604）和NCAIM Y01308的基因组序列草图。
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3
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