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致编辑的信:血液处理和样本存储对甲基化的影响可以忽略不计。

Letter to the editor: blood processing and sample storage have negligible effects on methylation.

机构信息

1School of Medicine and Public Health, University of Newcastle, Callaghan, NSW 2308 Australia.

2Centre for Information Based Medicine, Hunter Medical Research Institute, New Lambton Heights, NSW 2305 Australia.

出版信息

Clin Epigenetics. 2018 Feb 14;10:22. doi: 10.1186/s13148-018-0455-6. eCollection 2018.

DOI:10.1186/s13148-018-0455-6
PMID:29456766
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5813389/
Abstract

DNA methylation is a dynamic epigenetic mechanism. Researchers aiming to assess archived DNA samples are expressing concern about the effect of technical factors on methylation, as this may confound results. We reviewed recent reports examining this issue in blood samples and concluded that variation in collection, storage, and processing of blood DNA confers negligible effects on both global methylation and methylation status of specific genes. These results are concordant with studies that have investigated the effect of sample storage and processing on methylation in other tissues, such as tumour, sperm, and placenta samples.

摘要

DNA 甲基化是一种动态的表观遗传机制。研究人员旨在评估存档的 DNA 样本,他们对技术因素对甲基化的影响表示关注,因为这可能会使结果复杂化。我们回顾了最近检查血液样本中这个问题的报告,并得出结论,血液 DNA 的收集、储存和处理方式的变化对整体甲基化和特定基因的甲基化状态几乎没有影响。这些结果与研究其他组织(如肿瘤、精子和胎盘样本)中样本储存和处理对甲基化影响的研究结果一致。

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本文引用的文献

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The effects of storage temperature and duration of blood samples on DNA and RNA qualities.血液样本的储存温度和时长对DNA及RNA质量的影响。
PLoS One. 2017 Sep 19;12(9):e0184692. doi: 10.1371/journal.pone.0184692. eCollection 2017.
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Adjustment of Cell-Type Composition Minimizes Systematic Bias in Blood DNA Methylation Profiles Derived by DNA Collection Protocols.细胞类型组成的调整可将DNA采集方案衍生的血液DNA甲基化谱中的系统偏差降至最低。
PLoS One. 2016 Jan 22;11(1):e0147519. doi: 10.1371/journal.pone.0147519. eCollection 2016.
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DNA isolation method is a source of global DNA methylation variability measured with LUMA. Experimental analysis and a systematic review.DNA 分离方法是使用 LUMA 测量的全球 DNA 甲基化变异性的来源。实验分析和系统评价。
PLoS One. 2013 Apr 9;8(4):e60750. doi: 10.1371/journal.pone.0060750. Print 2013.
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MethylPCA: a toolkit to control for confounders in methylome-wide association studies.MethylPCA:一个用于在全基因组甲基化关联研究中控制混杂因素的工具包。
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A systematic evaluation of whole genome amplification of bisulfite-modified DNA.亚硫酸氢盐修饰 DNA 的全基因组扩增的系统评价。
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