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探索糖苷水解酶家族 13_18 的序列多样性揭示了一种新型的葡萄糖基甘油磷酸酶。

Exploring the sequence diversity in glycoside hydrolase family 13_18 reveals a novel glucosylglycerol phosphorylase.

机构信息

Centre for Synthetic Biology (CSB), Department of Biotechnology, Ghent University, Coupure Links 653, B-9000, Ghent, Belgium.

SynBioC Research Group, Department of Sustainable Organic Chemistry and Technology, Ghent University, Coupure Links 653, B-9000, Ghent, Belgium.

出版信息

Appl Microbiol Biotechnol. 2018 Apr;102(7):3183-3191. doi: 10.1007/s00253-018-8856-1. Epub 2018 Feb 22.

Abstract

In the carbohydrate-active enzyme database, GH13_18 is a family of retaining glycoside phosphorylases that act on α-glucosides. In this work, we explored the functional diversity of this family by comparing distinctive sequence motifs in different branches of its phylogenetic tree. A glycoside phosphorylase from Marinobacter adhaerens HP15 that was predicted to have a novel function was expressed and characterised. The enzyme was found to catalyse the reversible phosphorolysis of 2-O-α-D-glucosylglycerol with retention of the anomeric configuration, a specificity that has never been described before. Homology modelling, docking and mutagenesis were performed to pinpoint particular acceptor site residues (Tyr194, Ala333, Gln336) involved in the binding of glycerol. The new enzyme specificity provides additional insights into bacterial metabolic routes, being the first report of a phosphorolytic route for glucosylglycerol in a glucosylglycerol-producing organism. Furthermore, glucosylglycerol phosphorylase might be an attractive biocatalyst for the production of the osmolyte glucosylglycerol, which is currently produced on industrial scale by exploiting a side activity of the closely related sucrose phosphorylase. Family GH13_18 has clearly proven to be more diverse than was initially assumed, and the analysis of specificity-determining sequence motifs has shown to be a straightforward and fruitful tool for enzyme discovery.

摘要

在碳水化合物活性酶数据库中,GH13_18 是一类作用于α-葡萄糖苷的保留糖苷磷酸化酶家族。在这项工作中,我们通过比较其系统发育树不同分支中的独特序列基序,探索了该家族的功能多样性。预测具有新功能的 Marinobacter adhaerens HP15 糖苷磷酸化酶被表达和表征。发现该酶能够催化 2-O-α-D-葡萄糖基甘油的可逆磷酸解,保留非对映构型,这是以前从未描述过的特异性。进行了同源建模、对接和突变,以确定与甘油结合有关的特定受体部位残基(Tyr194、Ala333、Gln336)。新酶的特异性为细菌代谢途径提供了更多的见解,是在产生葡萄糖基甘油的生物体中首次报道的葡萄糖基甘油的磷酸解途径。此外,葡萄糖基甘油磷酸化酶可能是生产渗透调节剂葡萄糖基甘油的有吸引力的生物催化剂,目前通过利用密切相关的蔗糖磷酸化酶的副活性在工业规模上生产葡萄糖基甘油。家族 GH13_18 显然比最初假设的更为多样化,并且特异性决定序列基序的分析已被证明是酶发现的一种简单而富有成效的工具。

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