Franceus Jorick, Pinel Denise, Desmet Tom
Centre for Synthetic Biology, Department of Biochemical and Microbial Technology, Ghent University, Ghent, Belgium.
Centre for Synthetic Biology, Department of Biochemical and Microbial Technology, Ghent University, Ghent, Belgium
Appl Environ Microbiol. 2017 Sep 15;83(19). doi: 10.1128/AEM.01434-17. Print 2017 Oct 1.
Family GH13_18 of the carbohydrate-active enzyme database consists of retaining glycoside phosphorylases that have attracted interest with their potential for synthesizing valuable α-sugars and glucosides. Sucrose phosphorylase was believed to be the only enzyme with specificity in this subfamily for many years, but recent work revealed an enzyme with a different function and hinted at an even broader diversity that is left to discover. In this study, a putative sucrose phosphorylase from that resides in a previously unexplored branch of the family's phylogenetic tree was expressed and characterized. Unexpectedly, no activity on sucrose was observed. Guided by a thorough inspection of the genomic landscape surrounding other genes in the branch, the enzyme was found to be a glucosylglycerate phosphorylase, with a specificity never before reported. Homology modeling, docking, and mutagenesis pinpointed particular acceptor site residues (Asn275 and Glu383) involved in the binding of glycerate. Various organisms known to synthesize and accumulate glucosylglycerate as a compatible solute possess a putative glucosylglycerate phosphorylase gene, indicating that the phosphorylase may be a regulator of its intracellular levels. Moreover, homologs of this novel enzyme appear to be distributed among diverse bacterial phyla, a finding which suggests that many more organisms may be capable of assimilating or synthesizing glucosylglycerate than previously assumed. Glycoside phosphorylases are an intriguing group of carbohydrate-active enzymes that have been used for the synthesis of various economically appealing glycosides and sugars, and they are frequently subjected to enzyme engineering to further expand their application potential. The novel specificity discovered in this work broadens the diversity of these phosphorylases and opens up new possibilities for the efficient production of glucosylglycerate, which is a remarkably potent and versatile stabilizer for protein formulations. Finally, it is a new piece of the puzzle of glucosylglycerate metabolism, being the only known enzyme capable of catalyzing the breakdown of glucosylglycerate in numerous bacterial phyla.
碳水化合物活性酶数据库中的GH13_18家族包含保留型糖苷磷酸化酶,这些酶因其合成有价值的α-糖和糖苷的潜力而备受关注。多年来,蔗糖磷酸化酶一直被认为是该亚家族中唯一具有特异性的酶,但最近的研究发现了一种具有不同功能的酶,并暗示还有更广泛的多样性有待发现。在本研究中,表达并表征了一种来自该家族系统发育树中一个先前未被探索分支的假定蔗糖磷酸化酶。出乎意料的是,未观察到该酶对蔗糖有活性。通过对该分支中其他基因周围基因组环境的全面检查,发现该酶是一种葡糖基甘油酸磷酸化酶,具有前所未有的特异性。同源建模、对接和诱变确定了参与甘油酸结合的特定受体位点残基(Asn275和Glu383)。已知合成并积累葡糖基甘油酸作为相容性溶质的各种生物体都拥有一个假定的葡糖基甘油酸磷酸化酶基因,这表明该磷酸化酶可能是其细胞内水平的调节剂。此外,这种新型酶的同源物似乎分布在不同的细菌门类中,这一发现表明能够同化或合成葡糖基甘油酸的生物体可能比之前认为的更多。糖苷磷酸化酶是一类有趣的碳水化合物活性酶,已被用于合成各种具有经济吸引力的糖苷和糖,并且经常进行酶工程改造以进一步扩大其应用潜力。本研究中发现的新型特异性拓宽了这些磷酸化酶的多样性,并为高效生产葡糖基甘油酸开辟了新的可能性,葡糖基甘油酸是一种非常有效的蛋白质制剂通用稳定剂。最后,它为葡糖基甘油酸代谢难题增添了新的一块,是众多细菌门类中唯一已知能够催化葡糖基甘油酸分解的酶。