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本文引用的文献

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Genetic determinants and epigenetic effects of pioneer-factor occupancy.先驱因子占据的遗传决定因素和表观遗传效应。
Nat Genet. 2018 Feb;50(2):250-258. doi: 10.1038/s41588-017-0034-3. Epub 2018 Jan 22.
2
Pioneer factor Pax7 deploys a stable enhancer repertoire for specification of cell fate.先驱因子 Pax7 部署了一个稳定的增强子库,用于指定细胞命运。
Nat Genet. 2018 Feb;50(2):259-269. doi: 10.1038/s41588-017-0035-2. Epub 2018 Jan 22.
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p53 regulates enhancer accessibility and activity in response to DNA damage.p53可响应DNA损伤调节增强子的可及性和活性。
Nucleic Acids Res. 2017 Sep 29;45(17):9889-9900. doi: 10.1093/nar/gkx577.
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Rapid Chromatin Switch in the Direct Reprogramming of Fibroblasts to Neurons.成纤维细胞向神经元的直接重编程中的快速染色质转换。
Cell Rep. 2017 Sep 26;20(13):3236-3247. doi: 10.1016/j.celrep.2017.09.011.
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The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells.先驱因子OCT4需要染色质重塑因子BRG1来支持小鼠胚胎干细胞中的基因调控元件功能。
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Cooperative Binding of Transcription Factors Orchestrates Reprogramming.转录因子的协同结合调控重编程。
Cell. 2017 Jan 26;168(3):442-459.e20. doi: 10.1016/j.cell.2016.12.016. Epub 2017 Jan 19.
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FOXA1 Directs H3K4 Monomethylation at Enhancers via Recruitment of the Methyltransferase MLL3.FOXA1 通过招募甲基转移酶MLL3 指导增强子处的 H3K4 单甲基化。
Cell Rep. 2016 Dec 6;17(10):2715-2723. doi: 10.1016/j.celrep.2016.11.028.
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A role for mitotic bookmarking of SOX2 in pluripotency and differentiation.SOX2的有丝分裂标记在多能性和分化中的作用。
Genes Dev. 2016 Nov 15;30(22):2538-2550. doi: 10.1101/gad.289256.116. Epub 2016 Dec 5.
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A dynamic mode of mitotic bookmarking by transcription factors.转录因子进行有丝分裂标记的动态模式。
Elife. 2016 Nov 19;5:e22280. doi: 10.7554/eLife.22280.
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Mitotic binding of Esrrb marks key regulatory regions of the pluripotency network.Esrrb 的有丝分裂结合标记多能性网络的关键调控区域。
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先驱转录因子塑造表观遗传景观。

Pioneer transcription factors shape the epigenetic landscape.

机构信息

From the Laboratory of Molecular Genetics, Institut de Recherches Cliniques de Montréal, 110 Avenue des Pins Ouest, Montréal, Quebec H2W 1R7, Canada.

From the Laboratory of Molecular Genetics, Institut de Recherches Cliniques de Montréal, 110 Avenue des Pins Ouest, Montréal, Quebec H2W 1R7, Canada

出版信息

J Biol Chem. 2018 Sep 7;293(36):13795-13804. doi: 10.1074/jbc.R117.001232. Epub 2018 Mar 5.

DOI:10.1074/jbc.R117.001232
PMID:29507097
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6130937/
Abstract

Pioneer transcription factors have the unique and important role of unmasking chromatin domains during development to allow the implementation of new cellular programs. Compared with those of other transcription factors, this activity implies that pioneer factors can recognize their target DNA sequences in so-called compacted or "closed" heterochromatin and can trigger remodeling of the adjoining chromatin landscape to provide accessibility to nonpioneer transcription factors. Recent studies identified several steps of pioneer action, namely rapid but weak initial binding to heterochromatin and stabilization of binding followed by chromatin opening and loss of cytosine-phosphate-guanine (CpG) methylation that provides epigenetic memory. Whereas CpG demethylation depends on replication, chromatin opening does not. In this Minireview, we highlight the unique properties of this transcription factor class and the challenges of understanding their mechanism of action.

摘要

先驱转录因子在发育过程中具有揭示染色质结构域的独特而重要的作用,以允许新的细胞程序的实施。与其他转录因子相比,这种活性意味着先驱因子可以在所谓的致密或“封闭”异染色质中识别其靶 DNA 序列,并可以触发相邻染色质结构域的重塑,以提供非先驱转录因子的可及性。最近的研究确定了先驱作用的几个步骤,即快速但弱的初始与异染色质结合,以及随后的结合稳定,接着是染色质开放和胞嘧啶-磷酸-鸟嘌呤(CpG)甲基化的丢失,提供了表观遗传记忆。虽然 CpG 去甲基化依赖于复制,但染色质开放则不然。在这篇综述中,我们强调了这种转录因子类的独特性质及其作用机制理解所面临的挑战。