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动态网络测量揭示了牲畜市场和高山夏季放牧对瑞士牛群中疫情爆发风险的影响。

Dynamic network measures reveal the impact of cattle markets and alpine summering on the risk of epidemic outbreaks in the Swiss cattle population.

作者信息

Vidondo Beatriz, Voelkl Bernhard

机构信息

Veterinary Public Health Institute, University of Bern, Schwarzenburgstrasse 155, CH-3097, Liebefeld, Switzerland.

出版信息

BMC Vet Res. 2018 Mar 13;14(1):88. doi: 10.1186/s12917-018-1406-3.

Abstract

BACKGROUND

Livestock herds are interconnected with each other via an intricate network of transports of animals which represents a potential substrate for the spread of epidemic diseases. We analysed four years (2012-2015) of daily bovine transports to assess the risk of disease transmission and identify times and locations where monitoring would be most effective. Specifically, we investigated how the seasonal dynamics of transport networks, driven by the alpine summering and traditional cattle markets, affect the risk of epidemic outbreaks.

RESULTS

We found strong and consistent seasonal variation in several structural network measures as well as in measures for outbreak risk. Analysis of the consequences of excluding markets, dealers and alpine pastures from the network shows that markets contribute much more to the overall outbreak risk than alpine summering. Static descriptors of monthly transport networks were poor predictors of outbreak risk emanating from individual holdings; a dynamic measure, which takes the temporal structure of the network into account, gave better risk estimates. A stochastic simulation suggests that targeted surveillance based on this dynamic network allows a higher detection rate and smaller outbreak size at detection than compared to other sampling schemes.

CONCLUSIONS

Dynamic measures based on time-stamped data-the outgoing contact chain-can give better risk estimates and could help to improve surveillance schemes. Using this measure we find evidence that even in a country with intense summering practice, markets continue being the prime risk factor for the spread of contagious diseases.

摘要

背景

畜群通过复杂的动物运输网络相互连接,这构成了传染病传播的潜在媒介。我们分析了四年(2012 - 2015年)间每日的牛运输情况,以评估疾病传播风险,并确定监测最有效的时间和地点。具体而言,我们研究了由高山夏季放牧和传统牛市驱动的运输网络季节性动态如何影响疫情爆发风险。

结果

我们发现,在几个网络结构指标以及疫情爆发风险指标方面存在强烈且一致的季节性变化。对从网络中排除市场、经销商和高山牧场的后果进行分析表明,市场对总体疫情爆发风险的贡献远大于高山夏季放牧。月度运输网络的静态描述指标对单个养殖场引发的疫情爆发风险预测能力较差;一种考虑网络时间结构的动态指标能给出更好的风险估计。随机模拟表明,与其他抽样方案相比,基于这种动态网络的靶向监测在检测时能实现更高的检测率和更小的疫情规模。

结论

基于带时间戳数据的动态指标——传出接触链——能给出更好的风险估计,并有助于改进监测方案。通过使用该指标,我们发现有证据表明,即使在一个夏季放牧活动频繁的国家,市场仍然是传染病传播的主要风险因素。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5b87/5851077/2efde825826e/12917_2018_1406_Fig1_HTML.jpg

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