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从木质素到尼龙:利用代谢工程化的恶臭假单胞菌进行级联化学和生物化学转化。

From lignin to nylon: Cascaded chemical and biochemical conversion using metabolically engineered Pseudomonas putida.

机构信息

Institute of Systems Biotechnology, Saarland University, Germany.

Leibniz Institute for Agricultural Engineering and Bioeconomy, Potsdam, Germany.

出版信息

Metab Eng. 2018 May;47:279-293. doi: 10.1016/j.ymben.2018.03.003. Epub 2018 Mar 14.

DOI:10.1016/j.ymben.2018.03.003
PMID:29548984
Abstract

Cis,cis-muconic acid (MA) is a chemical that is recognized for its industrial value and is synthetically accessible from aromatic compounds. This feature provides the attractive possibility of producing MA from mixtures of aromatics found in depolymerized lignin, the most underutilized lignocellulosic biopolymer. Based on the metabolic pathway, the catechol (1,2-dihydroxybenzene) node is the central element of this type of production process: (i) all upper catabolic pathways of aromatics converge at catechol as the central intermediate, (ii) catechol itself is frequently generated during lignin pre-processing, and (iii) catechol is directly converted to the target product MA by catechol 1,2-dioxygenase. However, catechol is highly toxic, which poses a challenge for the bio-production of MA. In this study, the soil bacterium Pseudomonas putida KT2440 was upgraded to a fully genome-based host for the production of MA from catechol and upstream aromatics. At the core of the cell factories created was a designed synthetic pathway module, comprising both native catechol 1,2-dioxygenases, catA and catA2, under the control of the P promoter. The pathway module increased catechol tolerance, catechol 1,2-dioxygenase levels, and catechol conversion rates. MA, the formed product, acted as an inducer of the module, triggering continuous expression. Cellular energy level and ATP yield were identified as critical parameters during catechol-based production. The engineered MA-6 strain achieved an MA titer of 64.2 g L from catechol in a fed-batch process, which repeatedly regenerated the energy levels via specific feed pauses. The developed process was successfully transferred to the pilot scale to produce kilograms of MA at 97.9% purity. The MA-9 strain, equipped with a phenol hydroxylase, used phenol to produce MA and additionally converted o-cresol, m-cresol, and p-cresol to specific methylated variants of MA. This strain was used to demonstrate the entire value chain. Following hydrothermal depolymerization of softwood lignin to catechol, phenol and cresols, MA-9 accumulated 13 g L MA and small amounts of 3-methyl MA, which were hydrogenated to adipic acid and its methylated derivative to polymerize nylon from lignin for the first time.

摘要

顺,顺-粘康酸(MA)是一种具有工业价值的化学物质,可通过芳香族化合物合成获得。这一特性使得从解聚木质素中发现的芳香族混合物生产 MA 成为可能,而解聚木质素是最未充分利用的木质纤维素生物聚合物。根据代谢途径,儿茶酚(1,2-二羟基苯)节点是这种生产过程的中心要素:(i)芳香族物质的所有上向代谢途径都汇聚到儿茶酚作为中心中间产物,(ii)儿茶酚本身在木质素预处理过程中经常产生,以及(iii)儿茶酚可直接由儿茶酚 1,2-双加氧酶转化为目标产物 MA。然而,儿茶酚具有高度毒性,这给 MA 的生物生产带来了挑战。在这项研究中,土壤细菌恶臭假单胞菌 KT2440 被升级为一个完全基于基因组的宿主,用于从儿茶酚和上游芳香族物质生产 MA。所创建的细胞工厂的核心是一个设计的合成途径模块,该模块包含受 P 启动子控制的天然儿茶酚 1,2-双加氧酶 catA 和 catA2。该途径模块提高了儿茶酚的耐受性、儿茶酚 1,2-双加氧酶水平和儿茶酚转化率。形成的产物 MA 作为该模块的诱导物,触发持续表达。细胞能量水平和 ATP 产量被确定为基于儿茶酚生产的关键参数。经过工程改造的 MA-6 菌株在补料分批过程中从儿茶酚中获得了 64.2 g L 的 MA 产量,该过程通过特定的补料暂停反复再生能量水平。该工艺成功转移到中试规模,以 97.9%的纯度生产公斤级 MA。装备有苯酚羟化酶的 MA-9 菌株利用苯酚生产 MA,并且还将邻甲酚、间甲酚和对甲酚转化为 MA 的特定甲基化变体。该菌株被用于展示整个价值链。在软木木质素经水热解聚为儿茶酚、苯酚和甲酚后,MA-9 积累了 13 g L 的 MA 和少量的 3-甲基 MA,这些 MA 随后被氢化生成己二酸及其甲基化衍生物,从而首次从木质素中聚合尼龙。

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