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基于小波卷积神经网络特征和随机森林分类器的视网膜光学相干断层扫描图像中黄斑异常的自动诊断。

Automatic diagnosis of abnormal macula in retinal optical coherence tomography images using wavelet-based convolutional neural network features and random forests classifier.

机构信息

Isfahan University of Medical Sciences, School of Advanced Technologies in Medicine, Isfahan Departm, Iran.

Isfahan University of Medical Sciences, Medical Image and Signal Processing Research Center, Isfahan, Iran.

出版信息

J Biomed Opt. 2018 Mar;23(3):1-10. doi: 10.1117/1.JBO.23.3.035005.

DOI:10.1117/1.JBO.23.3.035005
PMID:29564864
Abstract

The present research intends to propose a fully automatic algorithm for the classification of three-dimensional (3-D) optical coherence tomography (OCT) scans of patients suffering from abnormal macula from normal candidates. The method proposed does not require any denoising, segmentation, retinal alignment processes to assess the intraretinal layers, as well as abnormalities or lesion structures. To classify abnormal cases from the control group, a two-stage scheme was utilized, which consists of automatic subsystems for adaptive feature learning and diagnostic scoring. In the first stage, a wavelet-based convolutional neural network (CNN) model was introduced and exploited to generate B-scan representative CNN codes in the spatial-frequency domain, and the cumulative features of 3-D volumes were extracted. In the second stage, the presence of abnormalities in 3-D OCTs was scored over the extracted features. Two different retinal SD-OCT datasets are used for evaluation of the algorithm based on the unbiased fivefold cross-validation (CV) approach. The first set constitutes 3-D OCT images of 30 normal subjects and 30 diabetic macular edema (DME) patients captured from the Topcon device. The second publicly available set consists of 45 subjects with a distribution of 15 patients in age-related macular degeneration, DME, and normal classes from the Heidelberg device. With the application of the algorithm on overall OCT volumes and 10 repetitions of the fivefold CV, the proposed scheme obtained an average precision of 99.33% on dataset1 as a two-class classification problem and 98.67% on dataset2 as a three-class classification task.

摘要

本研究旨在提出一种全自动算法,用于对患有异常黄斑的患者的三维(3-D)光学相干断层扫描(OCT)进行分类,以及对正常患者进行分类。所提出的方法不需要任何去噪、分割、视网膜对齐过程来评估视网膜内各层以及异常或病变结构。为了将异常病例与对照组进行分类,采用了两阶段方案,该方案包括用于自适应特征学习和诊断评分的自动子系统。在第一阶段,引入了基于小波的卷积神经网络(CNN)模型,用于在空间频率域中生成 B 扫描代表性 CNN 代码,并提取 3-D 体积的累积特征。在第二阶段,根据提取的特征对 3-D OCT 中的异常情况进行评分。该算法基于无偏五重交叉验证(CV)方法,使用了两个不同的视网膜 SD-OCT 数据集进行评估。第一组数据集由 30 名正常受试者和 30 名糖尿病性黄斑水肿(DME)患者的 3-D OCT 图像组成,这些图像是从 Topcon 设备中捕获的。第二组公开数据集由 45 名受试者组成,其中包括 15 名年龄相关性黄斑变性、DME 和正常组别的受试者,这些数据是从 Heidelberg 设备中获取的。通过对整个 OCT 体积和五重 CV 的 10 次重复应用该算法,所提出的方案在数据集 1 中作为二分类问题获得了 99.33%的平均精度,在数据集 2 中作为三分类任务获得了 98.67%的平均精度。

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