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基于系统发育多位点序列分析和表型分析对在南极南设得兰群岛乔治王岛分离出的三种可能的新型假单胞菌进行鉴定。

Phylogenetic MLSA and phenotypic analysis identification of three probable novel Pseudomonas species isolated on King George Island, South Shetland, Antarctica.

作者信息

Vásquez-Ponce Felipe, Higuera-Llantén Sebastián, Pavlov María S, Marshall Sergio H, Olivares-Pacheco Jorge

机构信息

Pontificia Universidad Católica de Valparaíso, Facultad de Ciencias, Instituto de Biología, Laboratorio de Genética e Inmunología Molecular, Valparaíso, Chile.

Pontificia Universidad Católica de Valparaíso, Facultad de Ciencias, Instituto de Biología, Laboratorio de Genética e Inmunología Molecular, Valparaíso, Chile.

出版信息

Braz J Microbiol. 2018 Oct-Dec;49(4):695-702. doi: 10.1016/j.bjm.2018.02.005. Epub 2018 Mar 15.

Abstract

Antarctica harbors a great diversity of microorganisms, including bacteria, archaea, microalgae and yeasts. The Pseudomonas genus is one of the most diverse and successful bacterial groups described to date, but only eight species isolated from Antarctica have been characterized. Here, we present three potentially novel species isolated on King George Island. The most abundant isolates from four different environments, were genotypically and phenotypically characterized. Multilocus sequence analysis and 16S rRNA gene analysis of a sequence concatenate for six genes (16S, aroE, glnS, gyrB, ileS and rpoD), determined one of the isolates to be a new Pseudomonas mandelii strain, while the other three are good candidates for new Pseudomonas species. Additionally, genotype analyses showed the three candidates to be part of a new subgroup within the Pseudomonas fluorescens complex, together with the Antarctic species Pseudomonas antarctica and Pseudomonas extremaustralis. We propose terming this new subgroup P. antarctica. Likewise, phenotypic analyses using API 20 NE and BIOLOG corroborated the genotyping results, confirming that all presented isolates form part of the P. fluorescens complex. Pseudomonas genus research on the Antarctic continent is in its infancy. To understand these microorganisms' role in this extreme environment, the characterization and description of new species is vital.

摘要

南极洲蕴藏着种类繁多的微生物,包括细菌、古菌、微藻和酵母。假单胞菌属是迄今为止描述的最多样化且最成功的细菌类群之一,但从南极洲分离出的只有8个物种得到了鉴定。在此,我们展示了在乔治王岛分离出的3个潜在新物种。对从4个不同环境中分离出的最丰富菌株进行了基因型和表型特征分析。通过对6个基因(16S、aroE、glnS、gyrB、ileS和rpoD)的序列串联进行多位点序列分析和16S rRNA基因分析,确定其中一个分离株为新的曼氏假单胞菌菌株,而其他3个是新假单胞菌物种的有力候选者。此外,基因型分析表明,这3个候选者与南极物种南极假单胞菌和极端南极假单胞菌一起,是荧光假单胞菌复合体中新亚群的一部分。我们建议将这个新亚群命名为南极假单胞菌。同样,使用API 20 NE和BIOLOG进行的表型分析证实了基因分型结果,确认所有展示的分离株都是荧光假单胞菌复合体的一部分。对南极大陆假单胞菌属的研究尚处于起步阶段。为了解这些微生物在这种极端环境中的作用,新物种的鉴定和描述至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fa2/6175711/3f3d319e7da1/gr1.jpg

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