从低水分食品中分离的两株新型肠炎沙门氏菌亚种肠炎菌株的基因组序列草图及其在食品安全研究中的应用
Draft Genome Sequences of Two Novel Salmonella enterica subsp. enterica Strains Isolated from Low-Moisture Foods with Applications in Food Safety Research.
作者信息
Radford Devon R, Leon-Velarde Carlos G, Chen Shu, Hamidi Oskouei Amir M, Balamurugan Sampathkumar
机构信息
Guelph Research and Development Centre, Agriculture and Agri-Food Canada, Guelph, Ontario, Canada.
Agriculture and Food Laboratory, Laboratory Services Division, University of Guelph, Guelph, Ontario, Canada
出版信息
Genome Announc. 2018 Mar 29;6(13):e00183-18. doi: 10.1128/genomeA.00183-18.
Abstract
The genomes of two strains of subsp. serovar Cubana and serovar Muenchen, isolated from dry hazelnuts and chia seeds, respectively, were sequenced using the Illumina MiSeq platform, assembled using the overlap-layout-consensus method, and aligned to their respective most identical sequence genome scaffolds using MUMMER and BLAST searches.
摘要
分别从干榛子和奇亚籽中分离出的古巴亚种血清型和慕尼黑血清型的两个菌株的基因组，使用Illumina MiSeq平台进行测序，采用重叠布局一致法进行组装，并使用MUMMER和BLAST搜索将其与各自最相似的序列基因组支架进行比对。
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本文引用的文献
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Strain-Specific Survival of Salmonella enterica in Peanut Oil, Peanut Shell, and Chia Seeds.肠炎沙门氏菌在花生油、花生壳和奇亚籽中的菌株特异性存活情况。
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