• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

L-选择素与 PIP2 调节的 FERM 缔合的分子动力学。

Molecular Dynamics of the Association of L-Selectin and FERM Regulated by PIP2.

机构信息

Beijing Key Laboratory of Bioprocess, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, China; Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen, the Netherlands.

Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen, the Netherlands.

出版信息

Biophys J. 2018 Apr 24;114(8):1858-1868. doi: 10.1016/j.bpj.2018.02.034.

DOI:10.1016/j.bpj.2018.02.034
PMID:29694864
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5936973/
Abstract

Phosphatidylinositol 4,5-bisphosphate (PIP2) acts as a signaling lipid, mediating membrane trafficking and recruitment of proteins to membranes. A key example is the PIP2-dependent regulation of the adhesion of L-selectin to the cytoskeleton adaptors of the N-terminal subdomain of ezrin-radixin-moesin (FERM). The molecular details of the mediating behavior of multivalent anionic PIP2 lipids in this process, however, remain unclear. Here, we use coarse-grained molecular dynamics simulation to explore the mechanistic details of PIP2 in the transformation, translocation, and association of the FERM/L-selectin complex. We compare membranes of different compositions and find that anionic phospholipids are necessary for both FERM and the cytoplasmic domain of L-selectin to absorb on the membrane surface. The subsequent formation of the FERM/L-selectin complex is strongly favored by the presence of PIP2, which clusters around both proteins and triggers a conformational transition in the cytoplasmic domain of L-selectin. We are able to quantify the effect of PIP2 on the association free energy of the complex by means of a potential of mean force. We conclude that PIP2 behaves as an adhesive agent to enhance the stability of the FERM/L-selectin complex and identify key residues involved. The molecular information revealed in this study highlights the specific role of membrane lipids such as PIP2 in protein translocation and potential signaling.

摘要

磷脂酰肌醇 4,5-二磷酸(PIP2)作为一种信号脂质,介导膜运输和蛋白质向膜的募集。一个关键的例子是 PIP2 依赖调节 L-选择素与 ezrin-radixin-moesin(FERM)N 端亚结构域的细胞骨架衔接蛋白的黏附。然而,该过程中多价阴离子 PIP2 脂质介导行为的分子细节仍不清楚。在这里,我们使用粗粒分子动力学模拟来探索 PIP2 在 FERM/L-选择素复合物转化、易位和缔合过程中的机制细节。我们比较了不同组成的膜,发现阴离子磷脂对于 FERM 和 L-选择素的细胞质结构域吸附在膜表面都是必需的。随后 PIP2 的存在强烈有利于 FERM/L-选择素复合物的形成,它在两种蛋白质周围聚集并引发 L-选择素细胞质结构域的构象转变。我们能够通过平均力势来量化 PIP2 对复合物缔合自由能的影响。我们的结论是,PIP2 作为一种黏附剂增强了 FERM/L-选择素复合物的稳定性,并确定了涉及的关键残基。本研究中揭示的分子信息突出了膜脂质(如 PIP2)在蛋白质易位和潜在信号转导中的特定作用。

相似文献

1
Molecular Dynamics of the Association of L-Selectin and FERM Regulated by PIP2.L-选择素与 PIP2 调节的 FERM 缔合的分子动力学。
Biophys J. 2018 Apr 24;114(8):1858-1868. doi: 10.1016/j.bpj.2018.02.034.
2
FERM domains recruit ample PI(4,5)Ps to form extensive protein-membrane attachments.FERM 结构域募集大量的 PI(4,5)Ps 形成广泛的蛋白-膜附着。
Biophys J. 2023 Apr 4;122(7):1325-1333. doi: 10.1016/j.bpj.2023.02.027. Epub 2023 Feb 22.
3
FERM domain of moesin desorbs the basic-rich cytoplasmic domain of l-selectin from the anionic membrane surface.moesin 的 FERM 结构域从阴离子膜表面解吸附 l-选择素的碱性丰富细胞质结构域。
J Mol Biol. 2013 Sep 23;425(18):3549-62. doi: 10.1016/j.jmb.2013.06.008. Epub 2013 Jun 22.
4
Molecular basis of PIP2-dependent conformational switching of phosphorylated CD44 in binding FERM.磷酸化 CD44 在结合 FERM 中依赖 PIP2 的构象转换的分子基础。
Biophys J. 2023 Jul 11;122(13):2675-2685. doi: 10.1016/j.bpj.2023.05.021. Epub 2023 May 22.
5
Intrinsically disordered region of talin's FERM domain functions as an initial PIP recognition site.talin 的 FERM 结构域的无规则结构区作为 PIP 的初始识别位点。
Biophys J. 2023 Apr 4;122(7):1277-1286. doi: 10.1016/j.bpj.2023.02.020. Epub 2023 Feb 22.
6
PIP2 Influences the Conformational Dynamics of Membrane-Bound KRAS4b.PIP2 影响膜结合 KRAS4b 的构象动态。
Biochemistry. 2019 Aug 20;58(33):3537-3545. doi: 10.1021/acs.biochem.9b00395. Epub 2019 Aug 1.
7
Molecular mechanism for bidirectional regulation of CD44 for lipid raft affiliation by palmitoylations and PIP2.通过棕榈酰化和 PIP2 对质膜脂筏结合进行 CD44 双向调控的分子机制
PLoS Comput Biol. 2020 Apr 9;16(4):e1007777. doi: 10.1371/journal.pcbi.1007777. eCollection 2020 Apr.
8
The cytoplasmic tail of L-selectin interacts with members of the Ezrin-Radixin-Moesin (ERM) family of proteins: cell activation-dependent binding of Moesin but not Ezrin.L-选择素的细胞质尾部与埃兹蛋白-根蛋白-膜突蛋白(ERM)家族的蛋白质成员相互作用:膜突蛋白存在细胞激活依赖性结合,但埃兹蛋白不存在。
J Biol Chem. 2002 Jan 18;277(3):2321-9. doi: 10.1074/jbc.M109460200. Epub 2001 Nov 8.
9
A novel membrane-dependent on/off switch mechanism of talin FERM domain at sites of cell adhesion.一种新型的依赖于细胞膜的粘着斑连接蛋白FERM 结构域的开/关开关机制。
Cell Res. 2012 Nov;22(11):1533-45. doi: 10.1038/cr.2012.97. Epub 2012 Jun 19.
10
Transition between conformational states of the TREK-1 K2P channel promoted by interaction with PIP.由与 PIP 相互作用促进的 TREK-1 K2P 通道构象状态的转变。
Biophys J. 2022 Jun 21;121(12):2380-2388. doi: 10.1016/j.bpj.2022.05.019. Epub 2022 May 19.

引用本文的文献

1
PIP promotes the incorporation of CD43, PSGL-1, and CD44 into nascent HIV-1 particles.PIP促进CD43、PSGL-1和CD44整合到新生的HIV-1颗粒中。
Sci Adv. 2025 Apr 4;11(14):eads9711. doi: 10.1126/sciadv.ads9711.
2
PIP2 promotes the incorporation of CD43, PSGL-1 and CD44 into nascent HIV-1 particles.磷脂酰肌醇-4,5-二磷酸(PIP2)促进CD43、P-选择素糖蛋白配体-1(PSGL-1)和CD44整合到新生的HIV-1颗粒中。
bioRxiv. 2024 Sep 5:2024.09.05.611432. doi: 10.1101/2024.09.05.611432.
3
Histone H3K18 and Ezrin Lactylation Promote Renal Dysfunction in Sepsis-Associated Acute Kidney Injury.组蛋白 H3K18 和 Ezrin 乳酰化促进脓毒症相关急性肾损伤的肾功能障碍。
Adv Sci (Weinh). 2024 Jul;11(28):e2307216. doi: 10.1002/advs.202307216. Epub 2024 May 20.
4
A phosphatidylinositol phosphate kinase inhibits Ras activation and regulates chemorepulsion in Dictyostelium discoideum.一种磷酸肌醇磷酸激酶抑制 Ras 的激活并调节 Dictyostelium discoideum 的趋化排斥反应。
J Cell Sci. 2023 Jul 15;136(14). doi: 10.1242/jcs.260541. Epub 2023 Jul 27.
5
Molecular basis of PIP2-dependent conformational switching of phosphorylated CD44 in binding FERM.磷酸化 CD44 在结合 FERM 中依赖 PIP2 的构象转换的分子基础。
Biophys J. 2023 Jul 11;122(13):2675-2685. doi: 10.1016/j.bpj.2023.05.021. Epub 2023 May 22.
6
Biophysics of Membrane Stiffening by Cholesterol and Phosphatidylinositol 4,5-bisphosphate (PIP2).胆固醇和磷脂酰肌醇 4,5-二磷酸(PIP2)对膜硬度的生物物理影响。
Adv Exp Med Biol. 2023;1422:61-85. doi: 10.1007/978-3-031-21547-6_2.
7
Intrinsically disordered region of talin's FERM domain functions as an initial PIP recognition site.talin 的 FERM 结构域的无规则结构区作为 PIP 的初始识别位点。
Biophys J. 2023 Apr 4;122(7):1277-1286. doi: 10.1016/j.bpj.2023.02.020. Epub 2023 Feb 22.
8
Two cooperative binding sites sensitize PI(4,5)P recognition by the tubby domain.两个协同结合位点可增强tubby结构域对PI(4,5)P的识别。
Sci Adv. 2022 Sep 9;8(36):eabp9471. doi: 10.1126/sciadv.abp9471. Epub 2022 Sep 7.
9
Molecular mechanism of CD44 homodimerization modulated by palmitoylation and membrane environments.CD44 同源二聚化的分子机制受棕榈酰化和膜环境调节。
Biophys J. 2022 Jul 19;121(14):2671-2683. doi: 10.1016/j.bpj.2022.06.021. Epub 2022 Jun 22.
10
The Interaction of Supramolecular Anticancer Drug Amphiphiles with Phospholipid Membranes.超分子抗癌药物两亲物与磷脂膜的相互作用
Nanoscale Adv. 2021 Jan 21;3(2):370-382. doi: 10.1039/d0na00697a. Epub 2020 Oct 26.

本文引用的文献

1
Molecular mechanism of cardiolipin-mediated assembly of respiratory chain supercomplexes.心磷脂介导呼吸链超复合物组装的分子机制
Chem Sci. 2016 Jul 1;7(7):4435-4443. doi: 10.1039/c5sc04664e. Epub 2016 Mar 15.
2
Multiple interactions between an Arf/GEF complex and charged lipids determine activation kinetics on the membrane.Arf/GEF 复合物与带电脂质之间的多种相互作用决定了在膜上的激活动力学。
Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):11416-11421. doi: 10.1073/pnas.1707970114. Epub 2017 Sep 18.
3
Structural basis for plant plasma membrane protein dynamics and organization into functional nanodomains.植物质膜蛋白动力学及组装成功能性纳米结构域的结构基础
Elife. 2017 Jul 31;6:e26404. doi: 10.7554/eLife.26404.
4
Structural Insights How PIP2 Imposes Preferred Binding Orientations of FAK at Lipid Membranes.结构洞察:PIP2 如何在脂质膜上强加 FAK 的优先结合取向。
J Phys Chem B. 2017 Apr 20;121(15):3523-3535. doi: 10.1021/acs.jpcb.6b09349. Epub 2017 Feb 10.
5
Lipid-Loving ANTs: Molecular Simulations of Cardiolipin Interactions and the Organization of the Adenine Nucleotide Translocase in Model Mitochondrial Membranes.亲脂性ANTs:心磷脂相互作用及腺嘌呤核苷酸转运酶在模型线粒体膜中组织形式的分子模拟
Biochemistry. 2016 Nov 15;55(45):6238-6249. doi: 10.1021/acs.biochem.6b00751. Epub 2016 Nov 4.
6
The Integrin Receptor in Biologically Relevant Bilayers: Insights from Molecular Dynamics Simulations.生物相关双分子层中的整合素受体:分子动力学模拟的见解
J Membr Biol. 2017 Aug;250(4):337-351. doi: 10.1007/s00232-016-9908-z. Epub 2016 Jul 27.
7
Multiscale Simulations Suggest a Mechanism for the Association of the Dok7 PH Domain with PIP-Containing Membranes.多尺度模拟揭示了Dok7 PH结构域与含磷脂酰肌醇的膜结合的机制。
PLoS Comput Biol. 2016 Jul 26;12(7):e1005028. doi: 10.1371/journal.pcbi.1005028. eCollection 2016 Jul.
8
Molecular dynamics simulations of membrane proteins and their interactions: from nanoscale to mesoscale.膜蛋白及其相互作用的分子动力学模拟:从纳米尺度到介观尺度
Curr Opin Struct Biol. 2016 Oct;40:8-16. doi: 10.1016/j.sbi.2016.06.007. Epub 2016 Jun 21.
9
Closing the gap: The approach of optical and computational microscopy to uncover biomembrane organization.缩小差距:光学显微镜与计算显微镜揭示生物膜组织的方法
Biochim Biophys Acta. 2016 Oct;1858(10):2558-2568. doi: 10.1016/j.bbamem.2016.03.025. Epub 2016 Mar 31.
10
Role of charged lipids in membrane structures - Insight given by simulations.带电脂质在膜结构中的作用——模拟提供的见解
Biochim Biophys Acta. 2016 Oct;1858(10):2322-2333. doi: 10.1016/j.bbamem.2016.03.016. Epub 2016 Mar 18.