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硒缺乏症大鼠的 microRNA 和 mRNA 表达谱的综合分析及相关 miRNA-mRNA 网络的鉴定。

Integrated analysis of microRNA and mRNA expression profiles in rats with selenium deficiency and identification of associated miRNA-mRNA network.

机构信息

Department of Cardiology, The Second Affiliated Hospital, Xi'an Jiaotong University School of Medical, Xi'an, Shaanxi, P.R. China.

Department of Cardiology, Meishan Branch of the Third Affiliated Hospital, Yanan University School of Medical, Meishan, Sichuan, P.R. China.

出版信息

Sci Rep. 2018 Apr 26;8(1):6601. doi: 10.1038/s41598-018-24826-w.

Abstract

Selenium deficiency is closely related with various type of cardiovascular disease. However, the miRNA-mRNA regulatory network in Selenium deficiency related cardiac change remains to be understand. In the present study, a reliable Selenium deficiency rat model was established and confirmed by pathological and biochemical examination. The mRNA and miRNA expression profiles were conducted by microarray technology. Gene Ontology (GO) Analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) Pathway Analysis was performed to investigate the function of targeted genes, and the relationship between miRNA and mRNA was studied by network analysis. A total of 4931 mRNAs and 119 miRNAs was differentially expressed between any two groups (control group, low-selenium group and selenium supplementation group). GO and KEGG pathway analysis of selected miRNAs target genes found that selenium deficiency was related to several different biological processes. Furthermore, a miRNA-mRNA regulatory network was conducted to illustrate the interaction of miRNAs and these targeted genes. In conclusion, our present study provides a new insight that potential molecular mechanism of Selenium deficiency was a multiply miRNAs and mRNA caused biological change.

摘要

硒缺乏与多种类型的心血管疾病密切相关。然而,硒缺乏相关心脏变化的 miRNA-mRNA 调控网络仍有待了解。在本研究中,通过病理和生化检查建立了可靠的硒缺乏大鼠模型,并得到了证实。通过微阵列技术进行了 mRNA 和 miRNA 表达谱分析。通过基因本体论 (GO) 分析和京都基因与基因组百科全书 (KEGG) 通路分析,研究了靶向基因的功能,并通过网络分析研究了 miRNA 与 mRNA 之间的关系。在对照组、低硒组和硒补充组之间,有 4931 个 mRNAs 和 119 个 miRNAs 存在差异表达。对选定的 miRNA 靶基因进行 GO 和 KEGG 通路分析发现,硒缺乏与几种不同的生物学过程有关。此外,还进行了 miRNA-mRNA 调控网络分析,以说明 miRNA 和这些靶基因之间的相互作用。总之,本研究提供了一个新的见解,即硒缺乏的潜在分子机制是多种 miRNA 和 mRNA 引起的生物学变化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c53d/5920094/cbaaa3c14ef5/41598_2018_24826_Fig1_HTML.jpg

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