Pourseif Mohammad M, Moghaddam Gholamali, Daghighkia Hossein, Nematollahi Ahmad, Omidi Yadollah
Department of Animal Sciences, Faculty of Agriculture, University of Tabriz, Tabriz, Iran.
Research Center for Pharmaceutical Nanotechnology, Biomedicine Institute, Tabriz University of Medical Sciences, Tabriz, Iran.
Bioimpacts. 2018;8(1):39-52. doi: 10.15171/bi.2018.06. Epub 2017 Dec 20.
In this study, we targeted the worm stage of to design a novel multi-epitope B- and helper T-cell based vaccine construct for immunization of dogs against this multi-host parasite. The vaccine was designed based on the local Eg14-3-3 antigen (Ag). DNA samples were extracted from the protoscoleces of the infected sheep's liver, and then subjected to the polymerase chain reaction (PCR) with 14-3-3 specific forward and reverse primers. For the vaccine designing, several steps were undertaken. Three-dimensional (3D) structure of the local Eg14-3-3 Ag was modeled by EasyModeller software. The protein modeling accuracy was then analyzed via various validation assays. Potential transmembrane helix, signal peptide, post-translational modifications and allergenicity of Eg14-3-3 were evaluated as the preliminary measures of B-cell epitopes (BEs ) prediction. Having used many web-servers, a well-designed process was carried out for improved prediction of BEs. High ranked linear and conformational BEs were utilized for engineering the final vaccine construct. Possible T-helper epitopes (TEs) were identified by the molecular docking between 13-mer fragments of the Eg14-3-3 Ag and two high frequent dog class II MHC alleles (i.e., DLA-DRB101101 and DRB101501). The epitopes coverage was evaluated by Shannon's variability plot. The final designed construct was analyzed based on different physicochemical properties, which was then codon optimized for high-level expression in k12. This minigene construct is the first dog-specific epitopic vaccine construct that is established based on TEs with high-binding affinity to canine MHC alleles. This study is the first part of a multi-antigenic vaccine designing work that represents as a novel dog-specific vaccine against . Here, we present key data on the step-by-step methodologies used for designing this vaccine, which is under comprehensive investigations.
在本研究中,我们针对该蠕虫阶段设计了一种新型的基于多表位B细胞和辅助性T细胞的疫苗构建体,用于犬类针对这种多宿主寄生虫的免疫接种。该疫苗基于本地Eg14-3-3抗原(Ag)设计。从感染绵羊肝脏的原头蚴中提取DNA样本,然后使用14-3-3特异性正向和反向引物进行聚合酶链反应(PCR)。为了设计疫苗,采取了几个步骤。通过EasyModeller软件对本地Eg14-3-3 Ag的三维(3D)结构进行建模。然后通过各种验证试验分析蛋白质建模的准确性。评估Eg14-3-3的潜在跨膜螺旋、信号肽、翻译后修饰和致敏性,作为预测B细胞表位(BEs)的初步措施。使用了许多网络服务器,进行了精心设计的过程以改进对BEs的预测。高排名的线性和构象BEs被用于构建最终的疫苗构建体。通过Eg14-3-3 Ag的13聚体片段与两个高频犬类II类MHC等位基因(即DLA-DRB101101和DRB101501)之间的分子对接鉴定可能的辅助性T细胞表位(TEs)。通过香农变异性图评估表位覆盖率。基于不同的物理化学性质对最终设计的构建体进行分析,然后对其进行密码子优化以在k12中进行高水平表达。这种小基因构建体是第一个基于与犬类MHC等位基因具有高结合亲和力的TEs建立的犬特异性表位疫苗构建体。本研究是多抗原疫苗设计工作的第一部分,该工作代表了一种针对的新型犬特异性疫苗。在这里,我们展示了用于设计这种疫苗的逐步方法的关键数据,该疫苗正在进行全面研究。