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本文引用的文献

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A dynamic model of tomato fruit growth integrating cell division, cell growth and endoreduplication.一个整合细胞分裂、细胞生长和核内复制的番茄果实生长动态模型。
Funct Plant Biol. 2013 Nov;40(11):1098-1114. doi: 10.1071/FP13007.
2
Histological and molecular investigation of the basis for variation in tomato fruit size in response to fruit load and genotype.番茄果实大小因结果负载量和基因型而异的基础的组织学和分子学研究。
Funct Plant Biol. 2012 Sep;39(9):754-763. doi: 10.1071/FP12093.
3
Deciphering genetic factors that determine melon fruit-quality traits using RNA-Seq-based high-resolution QTL and eQTL mapping.利用 RNA-Seq 为基础的高分辨率 QTL 和 eQTL 图谱解析决定甜瓜果实品质性状的遗传因素。
Plant J. 2018 Apr;94(1):169-191. doi: 10.1111/tpj.13838.
4
Wheat genetic resources in the post-genomics era: promise and challenges.后基因组时代的小麦遗传资源:前景与挑战。
Ann Bot. 2018 Mar 14;121(4):603-616. doi: 10.1093/aob/mcx148.
5
QTL Analyses in Multiple Populations Employed for the Fine Mapping and Identification of Candidate Genes at a Locus Affecting Sugar Accumulation in Melon ( L.).在多个群体中进行数量性状基因座(QTL)分析,用于甜瓜(L.)中一个影响糖分积累位点的精细定位和候选基因鉴定。
Front Plant Sci. 2017 Sep 26;8:1679. doi: 10.3389/fpls.2017.01679. eCollection 2017.
6
An InDel in the Promoter of Selected during Tomato Domestication Determines Fruit Malate Contents and Aluminum Tolerance.在番茄驯化过程中选择的启动子中的 InDel 决定了果实中的苹果酸含量和铝耐受性。
Plant Cell. 2017 Sep;29(9):2249-2268. doi: 10.1105/tpc.17.00211. Epub 2017 Aug 16.
7
Epigenetics for Plant Improvement: Current Knowledge and Modeling Avenues.植物改良的表观遗传学:当前知识与建模途径。
Trends Plant Sci. 2017 Jul;22(7):610-623. doi: 10.1016/j.tplants.2017.04.009. Epub 2017 Jun 3.
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Crops : Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform.作物:使用综合多尺度建模平台生成虚拟作物
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Domestication rewired gene expression and nucleotide diversity patterns in tomato.家育重塑了番茄中的基因表达和核苷酸多样性模式。
Plant J. 2017 Aug;91(4):631-645. doi: 10.1111/tpj.13592. Epub 2017 Jun 12.
10
Constructing Integrated Networks for Identifying New Secondary Metabolic Pathway Regulators in Grapevine: Recent Applications and Future Opportunities.构建用于鉴定葡萄中新的次生代谢途径调控因子的整合网络:近期应用与未来机遇
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从主要代谢的角度获得更好的果实。

Putting primary metabolism into perspective to obtain better fruits.

机构信息

UMR 1332 BFP, INRA, Univ. Bordeaux, Villenave d'Ornon, France.

UR 1115 PSH, INRA, Avignon Cedex 9, France.

出版信息

Ann Bot. 2018 Jun 28;122(1):1-21. doi: 10.1093/aob/mcy057.

DOI:10.1093/aob/mcy057
PMID:29718072
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6025238/
Abstract

BACKGROUND

One of the key goals of fruit biology is to understand the factors that influence fruit growth and quality, ultimately with a view to manipulating them for improvement of fruit traits.

SCOPE

Primary metabolism, which is not only essential for growth but is also a major component of fruit quality, is an obvious target for improvement. However, metabolism is a moving target that undergoes marked changes throughout fruit growth and ripening.

CONCLUSIONS

Agricultural practice and breeding have successfully improved fruit metabolic traits, but both face the complexity of the interplay between development, metabolism and the environment. Thus, more fundamental knowledge is needed to identify further strategies for the manipulation of fruit metabolism. Nearly two decades of post-genomics approaches involving transcriptomics, proteomics and/or metabolomics have generated a lot of information about the behaviour of fruit metabolic networks. Today, the emergence of modelling tools is providing the opportunity to turn this information into a mechanistic understanding of fruits, and ultimately to design better fruits. Since high-quality data are a key requirement in modelling, a range of must-have parameters and variables is proposed.

摘要

背景

水果生物学的主要目标之一是了解影响水果生长和品质的因素,最终旨在通过操纵这些因素来改善水果的特性。

范围

初级代谢是生长所必需的,也是果实品质的主要组成部分,显然是改良的目标。然而,新陈代谢是一个移动的目标,在整个果实生长和成熟过程中会发生明显的变化。

结论

农业实践和育种已经成功地改善了水果的代谢特性,但两者都面临着发育、代谢和环境之间相互作用的复杂性。因此,需要更多的基础知识来确定进一步操纵水果代谢的策略。近二十年来,涉及转录组学、蛋白质组学和/或代谢组学的后基因组学方法已经产生了大量关于水果代谢网络行为的信息。如今,模型工具的出现为将这些信息转化为对水果的机制理解提供了机会,并最终设计出更好的水果。由于建模的关键要求是高质量的数据,因此提出了一系列必需的参数和变量。