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糖酵解振荡的根源是一个恒定的低熵过程吗?

Is a constant low-entropy process at the root of glycolytic oscillations?

作者信息

Thoke Henrik Seir, Olsen Lars F, Duelund Lars, Stock R P, Heimburg Thomas, Bagatolli Luis A

机构信息

MEMPHYS - International and Interdisciplinary Research Network, Odense M, Denmark.

University of Southern Denmark, Institute for Biochemistry and Molecular Biology, Campusvej 55, 5230, Odense M, Denmark.

出版信息

J Biol Phys. 2018 Sep;44(3):419-431. doi: 10.1007/s10867-018-9499-2. Epub 2018 May 24.

DOI:10.1007/s10867-018-9499-2
PMID:29796745
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6082799/
Abstract

We measured temporal oscillations in thermodynamic variables such as temperature, heat flux, and cellular volume in suspensions of non-dividing yeast cells which exhibit temporal glycolytic oscillations. Oscillations in these variables have the same frequency as oscillations in the activity of intracellular metabolites, suggesting strong coupling between them. These results can be interpreted in light of a recently proposed theoretical formalism in which isentropic thermodynamic systems can display coupled oscillations in all extensive and intensive variables, reminiscent of adiabatic waves. This interpretation suggests that oscillations may be a consequence of the requirement of living cells for a constant low-entropy state while simultaneously performing biochemical transformations, i.e., remaining metabolically active. This hypothesis, which is in line with the view of the cellular interior as a highly structured and near equilibrium system where energy inputs can be low and sustain regular oscillatory regimes, calls into question the notion that metabolic processes are essentially dissipative.

摘要

我们测量了处于非分裂状态的酵母细胞悬浮液中温度、热通量和细胞体积等热力学变量的时间振荡,这些酵母细胞呈现出时间性糖酵解振荡。这些变量的振荡与细胞内代谢物活性的振荡频率相同,表明它们之间存在强耦合。这些结果可以根据最近提出的一种理论形式来解释,在该理论中,等熵热力学系统可以在所有广延变量和强度变量中显示耦合振荡,这让人联想到绝热波。这种解释表明,振荡可能是活细胞在进行生化转化(即保持代谢活性)的同时需要恒定低熵状态的结果。这一假设与将细胞内部视为高度结构化且接近平衡的系统的观点一致,在该系统中能量输入可以很低并维持规则的振荡状态,这对代谢过程本质上是耗散的这一观念提出了质疑。

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本文引用的文献

1
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Sci Rep. 2017 Nov 24;7(1):16250. doi: 10.1038/s41598-017-16442-x.
2
Live Cell Imaging Reveals pH Oscillations in Saccharomyces cerevisiae During Metabolic Transitions.活细胞成像揭示酿酒酵母代谢转变过程中的 pH 振荡。
Sci Rep. 2017 Oct 24;7(1):13922. doi: 10.1038/s41598-017-14382-0.
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Picosecond orientational dynamics of water in living cells.活细胞中水的皮秒级取向动力学
Nat Commun. 2017 Oct 12;8(1):904. doi: 10.1038/s41467-017-00858-0.
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Linear nonequilibrium thermodynamics of reversible periodic processes and chemical oscillations.可逆周期过程与化学振荡的线性非平衡热力学。
Phys Chem Chem Phys. 2017 Jul 5;19(26):17331-17341. doi: 10.1039/c7cp02189e.
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Tight coupling of metabolic oscillations and intracellular water dynamics in Saccharomyces cerevisiae.酿酒酵母中代谢振荡与细胞内水动力学的紧密耦合。
PLoS One. 2015 Feb 23;10(2):e0117308. doi: 10.1371/journal.pone.0117308. eCollection 2015.
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Structure and dynamics of water in crowded environments slows down peptide conformational changes.拥挤环境中水的结构与动力学减缓了肽的构象变化。
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7
An experimental study of the regulation of glycolytic oscillations in yeast.酵母糖酵解振荡调控的实验研究。
FEBS J. 2013 Dec;280(23):6033-44. doi: 10.1111/febs.12522. Epub 2013 Oct 11.
8
Coherent Behavior and the Bound State of Water and K(+) Imply Another Model of Bioenergetics: Negative Entropy Instead of High-energy Bonds.相干行为以及水与钾离子的束缚态意味着另一种生物能量学模型:负熵而非高能键。
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Measurements of intracellular ATP provide new insight into the regulation of glycolysis in the yeast Saccharomyces cerevisiae.细胞内 ATP 的测量为研究酵母 Saccharomyces cerevisiae 中糖酵解的调控提供了新的见解。
Integr Biol (Camb). 2012 Jan;4(1):99-107. doi: 10.1039/c1ib00108f. Epub 2011 Dec 2.