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热特性的系统发育保守性解释了链霉菌姐妹分类群的扩散限制和基因组分化。

Phylogenetic conservatism of thermal traits explains dispersal limitation and genomic differentiation of Streptomyces sister-taxa.

机构信息

School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA.

University of Colorado Boulder, Boulder, CO, 80309, USA.

出版信息

ISME J. 2018 Sep;12(9):2176-2186. doi: 10.1038/s41396-018-0180-3. Epub 2018 Jun 7.

Abstract

The latitudinal diversity gradient is a pattern of biogeography observed broadly in plants and animals but largely undocumented in terrestrial microbial systems. Although patterns of microbial biogeography across broad taxonomic scales have been described in a range of contexts, the mechanisms that generate biogeographic patterns between closely related taxa remain incompletely characterized. Adaptive processes are a major driver of microbial biogeography, but there is less understanding of how microbial biogeography and diversification are shaped by dispersal limitation and drift. We recently described a latitudinal diversity gradient of species richness and intraspecific genetic diversity in Streptomyces by using a geographically explicit culture collection. Within this geographically explicit culture collection, we have identified Streptomyces sister-taxa whose geographic distribution is delimited by latitude. These sister-taxa differ in geographic distribution, genomic diversity, and ecological traits despite having nearly identical SSU rRNA gene sequences. Comparative genomic analysis reveals genomic differentiation of these sister-taxa consistent with restricted gene flow across latitude. Furthermore, we show phylogenetic conservatism of thermal traits between the sister-taxa suggesting that thermal trait adaptation limits dispersal and gene flow across climate regimes as defined by latitude. Such phylogenetic conservatism of thermal traits is commonly associated with latitudinal diversity gradients for plants and animals. These data provide further support for the hypothesis that the Streptomyces latitudinal diversity gradient was formed as a result of historical demographic processes defined by dispersal limitation and driven by paleoclimate dynamics.

摘要

纬度多样性梯度是一种在植物和动物中广泛观察到的生物地理学模式,但在陆地微生物系统中基本上没有记录。尽管在广泛的分类尺度上已经描述了微生物生物地理学的模式,但在密切相关的分类单元之间产生生物地理模式的机制仍未完全描述。适应过程是微生物生物地理学的主要驱动因素,但对于微生物生物地理学和多样化是如何受到扩散限制和漂移的影响,人们的理解较少。我们最近通过使用地理明确的培养物收集来描述了链霉菌物种丰富度和种内遗传多样性的纬度多样性梯度。在这个地理明确的培养物集中,我们已经确定了地理分布受纬度限制的链霉菌姊妹分类单元。尽管这些姊妹分类单元的 16S rRNA 基因序列几乎相同,但它们的地理分布、基因组多样性和生态特征却有所不同。比较基因组分析揭示了这些姊妹分类单元的基因组分化,表明跨纬度的基因流受到限制。此外,我们还表明,在姊妹分类单元之间,热特性具有系统发育保守性,这表明热特性的适应限制了在纬度定义的气候区系中扩散和基因流。这种热特性的系统发育保守性通常与植物和动物的纬度多样性梯度有关。这些数据进一步支持了这样一种假设,即链霉菌的纬度多样性梯度是由扩散限制定义的历史人口过程形成的,并受到古气候动态的驱动。

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