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海泥海栖菌新种,从沿海沉积物中分离得到。

Aquimarina sediminis sp. nov., isolated from coastal sediment.

作者信息

Wang Nan-Nan, Zhou Liu-Yan, Li Ying-Xiu, Du Zong-Jun

机构信息

College of Marine Science, Shandong University, Weihai, 264209, People's Republic of China.

State Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, People's Republic of China.

出版信息

Antonie Van Leeuwenhoek. 2018 Dec;111(12):2257-2265. doi: 10.1007/s10482-018-1115-8. Epub 2018 Jun 18.

Abstract

A strictly aerobic, Gram-stain negative, long rod-shaped, motile by gliding and yellow pigmented bacterium, designated strain w01, was isolated from marine sediment. The strain was characterised to determine its taxonomic position by using a polyphasic approach. Strain w01 was observed to grow optimally in the presence of 3.0% (w/v) NaCl, at 30 °C and to hydrolyse Tweens 20, 40 and 80, starch, casein and alginate. Carotenoid pigments were found to be produced but not flexirubin-type pigments. On the basis of 16S rRNA gene sequence similarities, strain w01 is phylogenetically affiliated with the genus Aquimarina and is closely related to Aquimarina macrocephali JCM 15542 (97.4% sequence similarity) and Aquimarina muelleri KCTC 12285 (97.0%). Lower sequence similarities (< 97.0%) were found with the other currently recognised members of the genus Aquimarina. The predominant fatty acids were identified as iso-C (33.7%), C 3-OH (16.8%) and Cω7c (10.6%). The polar lipid profile was found to contain phosphatidylethanolamine, an unidentified aminolipid and two unidentified polar lipids. MK-6 was identified as the sole respiratory quinone. The G + C content of the genomic DNA was determined to be 33.3 mol%. Strain w01 can be differentiated genotypically and phenotypically from recognised species of the genus Aquimarina. The isolate is therefore concluded to represent a novel species, for which the name Aquimarina sediminis sp. nov. is proposed, with the type strain w01 (= KCTC 62350 = MCCC 1H00287).

摘要

从海洋沉积物中分离出一株严格需氧、革兰氏染色阴性、长杆状、通过滑动运动且产生黄色色素的细菌,命名为菌株w01。采用多相分类法对该菌株进行特征分析以确定其分类地位。观察到菌株w01在3.0%(w/v)NaCl存在的条件下、30℃时生长最佳,且能水解吐温20、40和80、淀粉、酪蛋白和藻酸盐。发现该菌株能产生类胡萝卜素色素,但不产生柔韧菌素类色素。基于16S rRNA基因序列相似性,菌株w01在系统发育上属于海栖菌属,与巨头海栖菌JCM 15542(序列相似性97.4%)和米勒海栖菌KCTC 12285(序列相似性97.0%)密切相关。与海栖菌属其他目前已确认的成员相比,序列相似性较低(<97.0%)。主要脂肪酸鉴定为异-C(33.7%)、C 3-OH(16.8%)和Cω7c(10.6%)。发现极性脂质谱包含磷脂酰乙醇胺、一种未鉴定的氨基脂质和两种未鉴定的极性脂质。MK-6被鉴定为唯一的呼吸醌。基因组DNA的G + C含量测定为33.3 mol%。菌株w01在基因型和表型上可与海栖菌属已确认的物种区分开来。因此,该分离株被认为代表一个新物种,提议将其命名为海栖沉积物海栖菌新种,模式菌株为w01(=KCTC 62350 = MCCC 1H00287)。

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