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优化用于硅藻的CRISPR/Cas9

Optimizing CRISPR/Cas9 for the Diatom .

作者信息

Stukenberg Daniel, Zauner Stefan, Dell'Aquila Gianluca, Maier Uwe G

机构信息

Department for Cell Biology, Philipps-Universität Marburg, Marburg, Germany.

LOEWE-Zentrum für Synthetische Mikrobiologie (SYNMIKRO), Philipps-Universität Marburg, Marburg, Germany.

出版信息

Front Plant Sci. 2018 Jun 6;9:740. doi: 10.3389/fpls.2018.00740. eCollection 2018.

DOI:10.3389/fpls.2018.00740
PMID:29928285
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5998643/
Abstract

CRISPR/Cas9 is a powerful tool for genome editing. We constructed an easy-to-handle expression vector for application in the model organism and tested its capabilities in order to apply CRISPR/Cas9 technology for our purpose. In our experiments, we targeted two different genes, screened for mutations and analyzed mutated diatoms in a three-step process. In the end, we identified cells, showing either monoallelic or homo-biallelic targeted mutations. Thus, we confirm that application of the CRISPR/Cas9 system for is very promising, although, as discussed, overlooked pitfalls have to be considered.

摘要

CRISPR/Cas9是一种用于基因组编辑的强大工具。我们构建了一种易于操作的表达载体,用于在模式生物中应用,并测试了其功能,以便将CRISPR/Cas9技术应用于我们的目的。在我们的实验中,我们针对两个不同的基因,通过一个三步过程筛选突变并分析突变的硅藻。最后,我们鉴定出显示单等位基因或双等位基因靶向突变的细胞。因此,我们证实,尽管如所讨论的那样,必须考虑到被忽视的陷阱,但将CRISPR/Cas9系统应用于[此处原文缺失具体应用内容]是非常有前景的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/22de/5998643/db89ead36e99/fpls-09-00740-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/22de/5998643/572ffc85d3d1/fpls-09-00740-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/22de/5998643/b170971d966e/fpls-09-00740-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/22de/5998643/905f76c83ec6/fpls-09-00740-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/22de/5998643/e3b215783ac9/fpls-09-00740-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/22de/5998643/db89ead36e99/fpls-09-00740-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/22de/5998643/572ffc85d3d1/fpls-09-00740-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/22de/5998643/b170971d966e/fpls-09-00740-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/22de/5998643/905f76c83ec6/fpls-09-00740-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/22de/5998643/e3b215783ac9/fpls-09-00740-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/22de/5998643/db89ead36e99/fpls-09-00740-g005.jpg

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Nature. 2017 Nov 23;551(7681):464-471. doi: 10.1038/nature24644. Epub 2017 Oct 25.
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RNA editing with CRISPR-Cas13.使用CRISPR-Cas13进行RNA编辑。
Science. 2017 Nov 24;358(6366):1019-1027. doi: 10.1126/science.aaq0180. Epub 2017 Oct 25.
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Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom.
Mar Drugs. 2025 Feb 6;23(2):66. doi: 10.3390/md23020066.
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Comparative RNA-Seq of Ten Accessions: Unravelling Criteria for Robust Strain Selection from a Bioproduction Point of View.比较十个品系的 RNA-Seq:从生物生产的角度揭示稳健菌株选择的标准。
Mar Drugs. 2024 Jul 30;22(8):353. doi: 10.3390/md22080353.
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CRISPR-based bioengineering in microalgae for production of industrially important biomolecules.基于CRISPR的微藻生物工程用于生产具有重要工业价值的生物分子。
Front Bioeng Biotechnol. 2023 Oct 26;11:1267826. doi: 10.3389/fbioe.2023.1267826. eCollection 2023.
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Biomanufacturing of γ-linolenic acid-enriched galactosyldiacylglycerols: Challenges in microalgae and potential in oleaginous yeasts.富含γ-亚麻酸的半乳糖二酰基甘油的生物制造:微藻面临的挑战及产油酵母的潜力
Synth Syst Biotechnol. 2023 Jul 7;8(3):469-478. doi: 10.1016/j.synbio.2023.06.007. eCollection 2023 Sep.
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Golgi fucosyltransferase 1 reveals its important role in α-1,4-fucose modification of N-glycan in CRISPR/Cas9 diatom Phaeodactylum tricornutum.高尔基岩藻糖基转移酶 1 揭示了其在 CRISPR/Cas9 硅藻三角褐指藻 N-聚糖α-1,4-岩藻糖基修饰中的重要作用。
Microb Cell Fact. 2023 Jan 7;22(1):6. doi: 10.1186/s12934-022-02000-2.
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Biotechnol Biofuels Bioprod. 2022 May 31;15(1):61. doi: 10.1186/s13068-022-02152-8.
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Sci Rep. 2022 Apr 29;12(1):7010. doi: 10.1038/s41598-022-11053-7.
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Plant Cell. 2017 Aug;29(8):2047-2070. doi: 10.1105/tpc.16.00910. Epub 2017 Aug 1.
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From hybridomas to a robust microalgal-based production platform: molecular design of a diatom secreting monoclonal antibodies directed against the Marburg virus nucleoprotein.从杂交瘤到强大的基于微藻的生产平台:一种分泌针对马尔堡病毒核蛋白的单克隆抗体的硅藻的分子设计
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Protist. 2017 Jul;168(3):271-282. doi: 10.1016/j.protis.2017.03.001. Epub 2017 Mar 15.
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PeerJ. 2016 Aug 25;4:e2344. doi: 10.7717/peerj.2344. eCollection 2016.
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Sci Rep. 2016 Apr 25;6:24951. doi: 10.1038/srep24951.