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FAM18149中半胱氨酸和蛋氨酸代谢的转录调控

Transcriptional Regulation of Cysteine and Methionine Metabolism in FAM18149.

作者信息

Wüthrich Daniel, Wenzel Claudia, Bavan Tharmatha, Bruggmann Rémy, Berthoud Hélène, Irmler Stefan

机构信息

Interfaculty Bioinformatics Unit and Swiss Institute of Bioinformatics, University of Bern, Bern, Switzerland.

Agroscope, Bern, Switzerland.

出版信息

Front Microbiol. 2018 Jun 11;9:1261. doi: 10.3389/fmicb.2018.01261. eCollection 2018.

Abstract

is common in the non-starter lactic acid bacteria (LAB) community of raw milk cheeses. This species can significantly contribute to flavor formation through amino acid metabolism. In this study, the DNA and RNA of FAM18149 were sequenced using next-generation sequencing technologies to reconstruct the metabolism of the sulfur-containing amino acids cysteine and methionine. Twenty-three genes were found to be involved in cysteine biosynthesis, the conversion of cysteine to methionine and , the S-adenosylmethionine recycling pathway, and the transport of sulfur-containing amino acids. Additionally, six methionine-specific T-boxes and one cysteine-specific T-box were found. Five of these were located upstream of genes encoding transporter functions. RNA-seq analysis and reverse-transcription quantitative polymerase reaction assays showed that expression of genes located downstream of these T-boxes was affected by the absence of either cysteine or methionine. Remarkably, the operon, which is associated with te methionine-to-cysteine conversion and is upregulated in the absence of cysteine, showed high read coverage in the 5'-untranslated region and an antisense-RNA in the 3'-untranslated region. This indicates that this operon is regulated by the combination of - and antisense-mediated regulation mechanisms. The results of this study may help in the selection of strains to control sulfuric flavor formation in cheese.

摘要

在生乳奶酪的非发酵乳酸菌(LAB)群落中很常见。该物种可通过氨基酸代谢对风味形成做出重大贡献。在本研究中,使用下一代测序技术对FAM18149的DNA和RNA进行测序,以重建含硫氨基酸半胱氨酸和蛋氨酸的代谢。发现有23个基因参与半胱氨酸生物合成、半胱氨酸向蛋氨酸的转化以及S-腺苷甲硫氨酸循环途径和含硫氨基酸的转运。此外,还发现了六个蛋氨酸特异性T盒和一个半胱氨酸特异性T盒。其中五个位于编码转运蛋白功能的基因上游。RNA测序分析和逆转录定量聚合酶反应测定表明,这些T盒下游基因的表达受半胱氨酸或蛋氨酸缺失的影响。值得注意的是,与蛋氨酸向半胱氨酸转化相关且在无半胱氨酸时上调的操纵子,在5'非翻译区显示出高读数覆盖率,在3'非翻译区有一个反义RNA。这表明该操纵子受σ因子和反义介导的调控机制共同调控。本研究结果可能有助于选择菌株来控制奶酪中含硫风味的形成。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a664/6004538/4f35fbc3487f/fmicb-09-01261-g0001.jpg

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