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D1-V185对促进光系统II中催化性MnCaO簇形成O的水分子的影响。

Impact of D1-V185 on the Water Molecules That Facilitate O Formation by the Catalytic MnCaO Cluster in Photosystem II.

作者信息

Kim Christopher J, Bao Han, Burnap Robert L, Debus Richard J

机构信息

Department of Biochemistry , University of California , Riverside , California 92521 , United States.

Department of Microbiology and Molecular Genetics , Oklahoma State University , Stillwater , Oklahoma 74078 , United States.

出版信息

Biochemistry. 2018 Jul 24;57(29):4299-4311. doi: 10.1021/acs.biochem.8b00630. Epub 2018 Jul 12.

Abstract

The oxidations of the O-evolving MnCaO cluster in Photosystem II are coupled to the release of protons to the thylakoid lumen via one or more proton egress pathways. These pathways are comprised of extensive networks of hydrogen-bonded water molecules and amino acid side chains. The hydrophobic residue, D1-V185, is adjacent to numerous water molecules in one of these pathways. The D1-V185N mutation dramatically slows O-O bond formation. This impairment has been attributed to a disruption of the hydrogen-bonded water molecules that are crucial for proton egress or whose rearrangement is required for catalysis. In this study, Fourier transform infrared spectroscopy was employed to characterize the impact of the D1-V185N mutation on the carboxylate groups and water molecules that form a network of hydrogen bonds in this putative proton egress pathway. By analyzing carboxylate stretching modes, carbonyl stretching modes of hydrogen-bonded carboxylic acids, O-H stretching modes of hydrogen-bonded water molecules, and D-O-D bending modes, we obtain evidence that the D1-V185N mutation perturbs the extensive network of hydrogen bonds that extends from Y to D1-D61 to a greater extent than any mutation yet examined but does not alter the water molecules that interact directly with D1-D61. The mutation also alters the environments of the carboxylate groups whose p K values change in response to the S to S and S to S transitions. Finally, the mutation alters the environment of the water molecule whose bending mode vanishes during the S to S transition, consistent with assigning the Ca-bound W3 as the water molecule that deprotonates and joins oxo bridge O5 during the S to S transition, possibly as the second substrate water molecule for O formation.

摘要

光系统II中放氧的锰钙氧簇的氧化作用通过一条或多条质子流出途径与质子释放到类囊体腔相耦合。这些途径由广泛的氢键连接的水分子和氨基酸侧链网络组成。疏水残基D1-V185与其中一条途径中的众多水分子相邻。D1-V185N突变极大地减缓了氧-氧键的形成。这种损害被归因于对质子流出至关重要的氢键连接的水分子的破坏,或者其重排是催化作用所必需的。在本研究中,采用傅里叶变换红外光谱来表征D1-V185N突变对在这个假定的质子流出途径中形成氢键网络的羧基和水分子的影响。通过分析羧基伸缩模式、氢键连接的羧酸的羰基伸缩模式、氢键连接的水分子的O-H伸缩模式和D-O-D弯曲模式,我们获得证据表明,D1-V185N突变比迄今研究的任何突变都更严重地扰乱了从Y延伸到D1-D61的广泛氢键网络,但不会改变直接与D1-D61相互作用的水分子。该突变还改变了其pK值响应于S到S和S到S转变而变化的羧基的环境。最后,该突变改变了在S到S转变期间其弯曲模式消失的水分子的环境,这与将与钙结合的W3指定为在S到S转变期间去质子化并加入氧桥O5的水分子一致,可能作为形成氧的第二个底物水分子。

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