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水压缩门控纳米孔传输。

Water-Compression Gating of Nanopore Transport.

机构信息

Department of Physics, University of Illinois at Urbana-Champaign, 1110 West Green Street, Urbana, Illinois 61801, USA.

Department of Physics, University of Illinois at Urbana-Champaign, 1110 West Green Street, Urbana, Illinois 61801, USA and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, 405 North Mathews Avenue, Urbana, Illinois 61801, USA.

出版信息

Phys Rev Lett. 2018 Jun 29;120(26):268101. doi: 10.1103/PhysRevLett.120.268101.

DOI:10.1103/PhysRevLett.120.268101
PMID:30004740
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6262874/
Abstract

Electric field-driven motion of biomolecules is a process essential to many analytics methods, in particular, to nanopore sensing, where a transient reduction of nanopore ionic current indicates the passage of a biomolecule through the nanopore. However, before any molecule can be examined by a nanopore, the molecule must first enter the nanopore from the solution. Previously, the rate of capture by a nanopore was found to increase with the strength of the applied electric field. Here, we theoretically show that, in the case of narrow pores in graphene membranes, increasing the strength of the electric field can not only decrease the rate of capture, but also repel biomolecules from the nanopore. As the strong electric field polarizes water near and within the nanopore, the high gradient of the field also produces a strong dielectrophoretic force that compresses the water. The pressure difference caused by the sharp water density gradient produces a hydrostatic force that repels DNA or proteins from the nanopore, preventing, in certain conditions, their capture. We show that such local compression of fluid can regulate the transport of biomolecules through nanoscale passages in the absence of physical gates and sort proteins according to their phosphorylated states.

摘要

电场驱动生物分子的运动是许多分析方法的基本过程,特别是在纳米孔传感中,纳米孔离子电流的瞬时减小表明生物分子通过了纳米孔。然而,在任何分子可以通过纳米孔进行检测之前,该分子必须首先从溶液中进入纳米孔。以前,研究发现,在石墨烯膜的窄孔的情况下,施加电场的强度增加不仅会降低捕获率,还会将生物分子从纳米孔中排斥出去。由于强电场使纳米孔附近和内部的水分子极化,电场的高梯度还会产生强大的介电泳力,从而压缩水。由尖锐的水密度梯度引起的压力差会产生静电力,将 DNA 或蛋白质从纳米孔中排斥出去,在某些情况下会阻止它们的捕获。我们表明,在没有物理门的情况下,这种局部压缩流体可以调节生物分子通过纳米级通道的传输,并根据其磷酸化状态对蛋白质进行分类。

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Water-Compression Gating of Nanopore Transport.水压缩门控纳米孔传输。
Phys Rev Lett. 2018 Jun 29;120(26):268101. doi: 10.1103/PhysRevLett.120.268101.
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[Single-molecule electrophoresis: renewed understanding of nanopore electrochemistry].[单分子电泳:对纳米孔电化学的新认识]
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本文引用的文献

1
Interference-Free Detection of Genetic Biomarkers Using Synthetic Dipole-Facilitated Nanopore Dielectrophoresis.利用合成偶极子辅助纳米孔介电泳实现遗传生物标志物的无干扰检测。
ACS Nano. 2017 Feb 28;11(2):1204-1213. doi: 10.1021/acsnano.6b07570. Epub 2017 Jan 6.
2
Atomistic Hydrodynamics and the Dynamical Hydrophobic Effect in Porous Graphene.原子尺度流体动力学与多孔石墨烯中的动态疏水效应
J Phys Chem Lett. 2016 May 19;7(10):1907-12. doi: 10.1021/acs.jpclett.6b00748. Epub 2016 May 10.
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Macroscopic electric field inside water-filled biological nanopores.充满水的生物纳米孔内部的宏观电场。
Phys Chem Chem Phys. 2016 Apr 7;18(13):8855-64. doi: 10.1039/c5cp07902k.
4
Nanopore sensing at ultra-low concentrations using single-molecule dielectrophoretic trapping.利用单分子介电泳捕获技术在超低浓度下进行纳米孔传感。
Nat Commun. 2016 Jan 6;7:10217. doi: 10.1038/ncomms10217.
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Plasmonic Nanopores for Trapping, Controlling Displacement, and Sequencing of DNA.用于捕获、控制DNA位移和测序的等离子体纳米孔
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DNA translocations through solid-state plasmonic nanopores.DNA通过固态等离子体纳米孔的转位。
Nano Lett. 2014 Dec 10;14(12):6917-25. doi: 10.1021/nl503034j. Epub 2014 Nov 7.
8
Pressure-voltage trap for DNA near a solid-state nanopore.固态纳米孔附近DNA的压力-电压阱
ACS Nano. 2014 Jul 22;8(7):7384-91. doi: 10.1021/nn5025829. Epub 2014 Jun 20.
9
All-atom empirical potential for molecular modeling and dynamics studies of proteins.蛋白质分子建模和动力学研究的全原子经验势。
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High-bandwidth protein analysis using solid-state nanopores.利用固态纳米孔进行高通量蛋白质分析。
Biophys J. 2014 Feb 4;106(3):696-704. doi: 10.1016/j.bpj.2013.12.025.