Institute of Genomic Cohort, Yonsei University Wonju College of Medicine, Wonju, Korea.
Department of Preventive Medicine, Yonsei University Wonju College of Medicine, Wonju, Korea.
J Korean Med Sci. 2018 Jun 20;33(29):e207. doi: 10.3346/jkms.2018.33.e207. eCollection 2018 Jul 16.
Lung cancer in never smokers (LCINS) differs etiologically and clinically from lung cancer attributed to smoking. After smoking, radon exposure is the second leading cause and the primary risk factor of lung cancer among never smokers. Exposure to radon can lead to genetic and epigenetic alterations in tumor genomes affecting genes and pathways involved in lung cancer development. The present study sought to explore genetic alterations associated with LCINS exposed to radon gas indoors.
Genetic associations were assessed via a case-control study of LCINS (39 cases and 30 controls) using next generation sequencing. Associations between genetic mutations and high exposure to radon were investigated by OncoPrint and heatmap graphs. Bioinformatic analysis was conducted using various tools. According radon exposure levels, we divided subjects in two groups of cases and controls.
We found that ABL2 rs117218074, SMARCA4 rs2288845, PIK3R2 rs142933317, MAPK1 rs1803545, and androgen receptor (AR) rs66766400 were associated with LCINS exposed to high radon levels. Among these, Chromodomain helicase DNA-binding protein 4 (CHD4) rs74790047, TSC2 rs2121870, and AR rs66766408 were identified as common exonic mutations in both lung cancer patients and normal individuals exposed to high levels of radon indoor.
We identified that CHD4 rs74790047, TSC2 rs2121870, and AR rs66766408 are found to be common exonic mutations in both lung cancer patients and normal individuals exposed to radon indoors. Further analysis is needed to determine whether these genes are completely responsible for LCINS exposed to residential radon.
不吸烟肺癌(LCINS)在病因学和临床方面与归因于吸烟的肺癌不同。吸烟后,氡暴露是不吸烟者肺癌的第二大主要原因和首要风险因素。氡暴露可导致肿瘤基因组中的遗传和表观遗传改变,影响肺癌发生发展相关的基因和通路。本研究旨在探索与室内氡暴露相关的 LCINS 遗传改变。
采用下一代测序对 LCINS(39 例病例和 30 例对照)进行病例对照研究,评估遗传关联。通过 OncoPrint 和热图图探讨基因突变与氡高暴露的关系。利用各种工具进行生物信息学分析。根据氡暴露水平,我们将受试者分为病例组和对照组两组。
我们发现 ABL2 rs117218074、SMARCA4 rs2288845、PIK3R2 rs142933317、MAPK1 rs1803545 和雄激素受体(AR)rs66766400 与暴露于高氡水平的 LCINS 相关。其中,染色质解旋酶 DNA 结合蛋白 4(CHD4)rs74790047、TSC2 rs2121870 和 AR rs66766408 被鉴定为暴露于室内高氡水平的肺癌患者和正常个体共有的外显子突变。
我们发现 CHD4 rs74790047、TSC2 rs2121870 和 AR rs66766408 是暴露于室内氡的肺癌患者和正常个体共有的外显子突变。需要进一步分析这些基因是否完全负责 LCINS 暴露于住宅氡。