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机器学习在乳腺癌放射组学中的应用:一项包含 922 名患者和 529 项 DCE-MRI 特征的研究。

A machine learning approach to radiogenomics of breast cancer: a study of 922 subjects and 529 DCE-MRI features.

机构信息

Department of Radiology, Duke University School of Medicine, Durham, NC, 22705, USA.

Department of Electrical and Computer Engineering, Duke University, Durham, NC, 22705, USA.

出版信息

Br J Cancer. 2018 Aug;119(4):508-516. doi: 10.1038/s41416-018-0185-8. Epub 2018 Jul 23.

DOI:10.1038/s41416-018-0185-8
PMID:30033447
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6134102/
Abstract

BACKGROUND

Recent studies showed preliminary data on associations of MRI-based imaging phenotypes of breast tumours with breast cancer molecular, genomic, and related characteristics. In this study, we present a comprehensive analysis of this relationship.

METHODS

We analysed a set of 922 patients with invasive breast cancer and pre-operative MRI. The MRIs were analysed by a computer algorithm to extract 529 features of the tumour and the surrounding tissue. Machine-learning-based models based on the imaging features were trained using a portion of the data (461 patients) to predict the following molecular, genomic, and proliferation characteristics: tumour surrogate molecular subtype, oestrogen receptor, progesterone receptor and human epidermal growth factor status, as well as a tumour proliferation marker (Ki-67). Trained models were evaluated on the set of the remaining 461 patients.

RESULTS

Multivariate models were predictive of Luminal A subtype with AUC = 0.697 (95% CI: 0.647-0.746, p < .0001), triple negative breast cancer with AUC = 0.654 (95% CI: 0.589-0.727, p < .0001), ER status with AUC = 0.649 (95% CI: 0.591-0.705, p < .001), and PR status with AUC = 0.622 (95% CI: 0.569-0.674, p < .0001). Associations between individual features and subtypes we also found.

CONCLUSIONS

There is a moderate association between tumour molecular biomarkers and algorithmically assessed imaging features.

摘要

背景

最近的研究显示了基于 MRI 的乳腺癌成像表型与乳腺癌分子、基因组和相关特征之间关联的初步数据。在这项研究中,我们对这种关系进行了全面分析。

方法

我们分析了一组 922 名患有浸润性乳腺癌和术前 MRI 的患者。通过计算机算法对 MRI 进行分析,以提取肿瘤和周围组织的 529 个特征。使用部分数据(461 名患者)基于成像特征训练基于机器学习的模型,以预测以下分子、基因组和增殖特征:肿瘤替代分子亚型、雌激素受体、孕激素受体和人表皮生长因子状态,以及肿瘤增殖标志物(Ki-67)。在其余的 461 名患者中评估训练模型。

结果

多变量模型可预测 Luminal A 亚型,AUC=0.697(95%CI:0.647-0.746,p<0.0001),三阴性乳腺癌,AUC=0.654(95%CI:0.589-0.727,p<0.0001),ER 状态,AUC=0.649(95%CI:0.591-0.705,p<0.001)和 PR 状态,AUC=0.622(95%CI:0.569-0.674,p<0.0001)。我们还发现了个体特征与亚型之间的关联。

结论

肿瘤分子生物标志物与算法评估的成像特征之间存在中度关联。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e65/6134102/1bc669a87463/41416_2018_185_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e65/6134102/547f43bfe0f8/41416_2018_185_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e65/6134102/91c779d735ff/41416_2018_185_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e65/6134102/0deef94e454b/41416_2018_185_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e65/6134102/1bc669a87463/41416_2018_185_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e65/6134102/547f43bfe0f8/41416_2018_185_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e65/6134102/91c779d735ff/41416_2018_185_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e65/6134102/0deef94e454b/41416_2018_185_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e65/6134102/1bc669a87463/41416_2018_185_Fig4_HTML.jpg

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