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新型磁趋化 Alphaproteobacteria 的基因组研究揭示了磁趋化的多源性。

Genomic study of a novel magnetotactic Alphaproteobacteria uncovers the multiple ancestry of magnetotaxis.

机构信息

Institute of Biosciences and Biotechnologies of Aix Marseille (BIAM), UMR7265 CEA - CNRS - Aix Marseille University, CEA Cadarache, 13108, Saint-Paul-lez-Durance, France.

Laboratoire de Biométrie et Biologie Evolutive, CNRS, UMR5558, Université Claude Bernard - Lyon 1, 69622, Villeurbanne, France.

出版信息

Environ Microbiol. 2018 Dec;20(12):4415-4430. doi: 10.1111/1462-2920.14364. Epub 2018 Oct 16.

DOI:10.1111/1462-2920.14364
PMID:30043533
Abstract

Ecological and evolutionary processes involved in magnetotactic bacteria (MTB) adaptation to their environment have been a matter of debate for many years. Ongoing efforts for their characterization are progressively contributing to understand these processes, including the genetic and molecular mechanisms responsible for biomineralization. Despite numerous culture-independent MTB characterizations, essentially within the Proteobacteria phylum, only few species have been isolated in culture because of their complex growth conditions. Here, we report a newly cultivated magnetotactic, microaerophilic and chemoorganoheterotrophic bacterium isolated from the Mediterranean Sea in Marseille, France: Candidatus Terasakiella magnetica strain PR-1 that belongs to an Alphaproteobacteria genus with no magnetotactic relative. By comparing the morphology and the whole genome shotgun sequence of this MTB with those of closer relatives, we brought further evidence that the apparent vertical ancestry of magnetosome genes suggested by previous studies within Alphaproteobacteria hides a more complex evolutionary history involving horizontal gene transfers and/or duplication events before and after the emergence of Magnetospirillum, Magnetovibrio and Magnetospira genera. A genome-scale comparative genomics analysis identified several additional candidate functions and genes that could be specifically associated to MTB lifestyle in this class of bacteria.

摘要

多年来,与趋磁细菌(MTB)适应其环境相关的生态和进化过程一直是争论的焦点。对它们的特征进行的持续研究正在逐渐帮助人们理解这些过程,包括负责生物矿化的遗传和分子机制。尽管已经进行了许多非培养的 MTB 特征描述,主要在变形菌门内,但由于其复杂的生长条件,只有少数几种在培养中被分离出来。在这里,我们报告了一种从法国马赛的地中海新培养的趋磁、微需氧和化能异养细菌:假诺卡氏菌属 PR-1 菌株,它属于α变形菌门,没有趋磁相关的相对物。通过比较这种 MTB 的形态和全基因组鸟枪法序列与更接近的亲缘关系,我们进一步证明了以前在α变形菌门内研究表明的磁小体基因的明显垂直祖先隐藏了更复杂的进化历史,涉及到水平基因转移和/或在 Magnetospirillum、Magnetovibrio 和 Magnetospira 属出现之前和之后的复制事件。基于基因组规模的比较基因组学分析确定了几个其他的候选功能和基因,这些基因可能与该类细菌中的 MTB 生活方式有特定关联。

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