a Department of Pharmaceutical and Biological Engineering , Shenyang University of Chemical Technology , Shenyang , China.
b Key Laboratory of Structure-Based Drug Design & Discovery, Ministry of Education , Shenyang Pharmaceutical University , Shenyang , China.
J Biomol Struct Dyn. 2019 Aug;37(13):3399-3409. doi: 10.1080/07391102.2018.1515117. Epub 2018 Nov 13.
The rice blast disease caused by the fungus is one of the most devastating rice diseases, but there is no effective fungicide toward chitinase which is a key enzyme of . In this study, we observed that distortion and cell-wall damage of hyphae were significantly under the scanning electron micrograph after a 24-h treatment with 10 mg/L isobavachalcone (IBC) extracted from L. To further explore the effect of IBC on the cell wall of , we examined changes in enzymes associated with cell wall degradation by enzyme activity experiments, treated liquid culture mycelia with 10 mg/L IBC for 1 h. Results displayed that chitinase was obviously more active than control group. To illustrate the interactions between IBC and chitinase, the studies of homology modeling and molecular docking were carried out successively. The results revealed that IBC had hydrogen bonds with residues ASP267 and ARG276 of chitinase. Besides, these nonpolar residues TYR270, PRO271, VAL272, LEU310, PRO311, TYR316, and LEU317 were able to form strong hydrophobic interactions. Binding energies of the chitinase-IBC complexes were calculated by MM-GBSA showed that the ΔG score of molecular dynamics had lower binding energy and more stable than docking complexes. All above, IBC owns significant agonistic activity in chitinase and would be a potent fungicide to inhibit the growth of . We hope the above information provides an important insight for understanding the interactions between IBC and chitinase, which may be useful in the discovery of a novel potent agonist. Communicated by Ramaswamy H. Sarma.
稻瘟病是由真菌引起的,是最具破坏性的水稻病害之一,但目前还没有针对几丁质酶的有效杀菌剂,几丁质酶是 的关键酶。在这项研究中,我们观察到,在 10mg/L 异甘草素(IBC)处理 24 小时后, 的菌丝体在扫描电子显微镜下明显出现扭曲和细胞壁损伤,异甘草素从 中提取。为了进一步探索 IBC 对 的细胞壁的影响,我们通过酶活性实验检查了与细胞壁降解相关的酶的变化,用 10mg/L IBC 处理液体培养菌丝 1 小时。结果显示,几丁质酶的活性明显高于对照组。为了说明 IBC 与几丁质酶之间的相互作用,我们先后进行了同源建模和分子对接研究。结果表明,IBC 与几丁质酶的残基 ASP267 和 ARG276 形成氢键。此外,这些非极性残基 TYR270、PRO271、VAL272、LEU310、PRO311、TYR316 和 LEU317 能够形成强疏水相互作用。通过 MM-GBSA 计算几丁质酶-IBC 复合物的结合能表明,分子动力学的 ΔG 评分具有更低的结合能,比对接复合物更稳定。综上所述,IBC 对几丁质酶具有显著的激动活性,可能成为一种有效的杀菌剂来抑制 的生长。我们希望上述信息为理解 IBC 和几丁质酶之间的相互作用提供重要的见解,这可能有助于发现新型有效的激动剂。由 Ramaswamy H. Sarma 交流。