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茶树基因超家族的全基因组鉴定、分类和表达分析()。

Genome-Wide Identification, Classification and Expression Analysis of the Gene Superfamily in Tea Plant ().

机构信息

College of Horticulture, Northwest A&F University, Yangling 712100, China.

出版信息

Int J Mol Sci. 2018 Sep 5;19(9):2633. doi: 10.3390/ijms19092633.

Abstract

Heat shock proteins (HSPs) function as molecular chaperones. These proteins are encoded by a multigene family whose members play crucial roles in plant growth, development and stress response. However, little is known about the gene superfamily in tea plant. In this study, a total of 47 genes were identified, including 7 , 18 , and 22 genes. Phylogenetic and composition analyses showed that CsHSP proteins in the same subfamily have similar gene structures and conserved motifs, but significant differences exist in the different subfamilies. In addition, expression analysis revealed that almost all genes were specifically expressed in one or more tissues, and significantly induced under heat and drought stress, implying that genes play important roles in tea plant growth, development, and response to heat and drought stress. Furthermore, a potential interaction network dominated by CsHSPs, including HSP70/HSP90 organizing protein (HOP) and heat shock transcription factor (HSF), is closely related to the abovementioned processes. These results increase our understanding of genes and their roles in tea plant, and thus, this study could contribute to the cloning and functional analysis of genes and their encoded proteins in the future.

摘要

热休克蛋白(HSPs)作为分子伴侣发挥作用。这些蛋白质由一个多基因家族编码,其成员在植物生长、发育和应激反应中起着至关重要的作用。然而,关于茶树中的基因超家族知之甚少。在这项研究中,共鉴定出 47 个基因,包括 7 个、18 个和 22 个基因。系统发育和组成分析表明,同一亚家族的 CsHSP 蛋白具有相似的基因结构和保守基序,但不同亚家族之间存在显著差异。此外,表达分析表明,几乎所有的基因都特异性地在一种或多种组织中表达,并且在热和干旱胁迫下显著诱导,这表明基因在茶树的生长、发育以及对热和干旱胁迫的响应中发挥着重要作用。此外,由 CsHSPs 组成的一个潜在的互作网络,包括 HSP70/HSP90 组织蛋白(HOP)和热休克转录因子(HSF),与上述过程密切相关。这些结果增加了我们对基因及其在茶树中的作用的理解,因此,这项研究有助于未来对基因及其编码蛋白的克隆和功能分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/79c1/6164807/846cdff124ed/ijms-19-02633-g001.jpg

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