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丹顶鹤的粪便病毒组

The fecal virome of red-crowned cranes.

作者信息

Wang Yan, Yang Shixing, Liu Dawei, Zhou Chenglin, Li Wang, Lin Yuan, Wang Xiaochun, Shen Quan, Wang Hua, Li Chuang, Zong Minghui, Ding Yuzhu, Song Qianben, Deng Xutao, Qi Dunwu, Zhang Wen, Delwart Eric

机构信息

School of Medicine, Jiangsu University, Zhenjiang, 212013, Jiangsu, People's Republic of China.

College of Biology and the Environment, Nanjing Forestry Police College, Nanjing, 210023, Jiangsu, People's Republic of China.

出版信息

Arch Virol. 2019 Jan;164(1):3-16. doi: 10.1007/s00705-018-4037-x. Epub 2018 Sep 17.

DOI:10.1007/s00705-018-4037-x
PMID:30225519
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7086969/
Abstract

The red-crowned crane is one of the rarest crane species, and its population is decreasing due to loss of habitat, poisoning, and infections. Using a viral metagenomics approach, we analyzed the virome of feces from wild and captive red-crowned cranes, which were pooled separately. Vertebrate viruses belonging to the families Picornaviridae, Parvoviridae, Circoviridae, and Caliciviridae were detected. Among the members of the family Picornaviridae, we found three that appear to represent new genera. Six nearly complete genomes from members of the family Parvoviridae were also obtained, including four new members of the proposed genus "Chapparvovirus", and two members of the genus Aveparvovirus. Six small circular DNA genomes were also characterized. One nearly complete genome showing a low level of sequence identity to caliciviruses was also characterized. Numerous viruses believed to infect insects, plants, and crustaceans were also identified, which were probably derived from the diet of red-crowned cranes. This study increases our understanding of the enteric virome of red-crowned cranes and provides a baseline for comparison to those of other birds or following disease outbreaks.

摘要

丹顶鹤是最珍稀的鹤类物种之一，其种群数量因栖息地丧失、中毒和感染而不断减少。我们采用病毒宏基因组学方法，分别对野生和圈养丹顶鹤的粪便病毒组进行了分析。检测到了属于小RNA病毒科、细小病毒科、圆环病毒科和杯状病毒科的脊椎动物病毒。在小RNA病毒科成员中，我们发现了三种似乎代表新属的病毒。还获得了来自细小病毒科成员的六个近乎完整的基因组，包括拟议的“沙帕细小病毒属”的四个新成员，以及禽细小病毒属的两个成员。还对六个小的环状DNA基因组进行了特征分析。还对一个与杯状病毒序列同一性水平较低的近乎完整的基因组进行了特征分析。还鉴定出许多据信感染昆虫、植物和甲壳类动物的病毒，这些病毒可能源自丹顶鹤的食物。这项研究增进了我们对丹顶鹤肠道病毒组的了解，并为与其他鸟类的病毒组进行比较或在疾病爆发后进行比较提供了一个基线。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9351/7086969/76fa6aa5d91a/705_2018_4037_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9351/7086969/dd5a7a036843/705_2018_4037_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9351/7086969/68a8aafcfe88/705_2018_4037_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9351/7086969/503d53e97291/705_2018_4037_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9351/7086969/01ca5c8dc7d5/705_2018_4037_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9351/7086969/95412ecaf926/705_2018_4037_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9351/7086969/983ec2ea673d/705_2018_4037_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9351/7086969/76fa6aa5d91a/705_2018_4037_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9351/7086969/dd5a7a036843/705_2018_4037_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9351/7086969/68a8aafcfe88/705_2018_4037_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9351/7086969/503d53e97291/705_2018_4037_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9351/7086969/01ca5c8dc7d5/705_2018_4037_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9351/7086969/95412ecaf926/705_2018_4037_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9351/7086969/983ec2ea673d/705_2018_4037_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9351/7086969/76fa6aa5d91a/705_2018_4037_Fig7_HTML.jpg

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