Advanced Biotechnology and Breeding Centre, Malaysian Palm Oil Board, No. 6, Persiaran Institusi, Bandar Baru Bangi, Kajang, Selangor, Malaysia.
Genomics and Computational Biology Research Group, University of South Wales,Pontypridd, Wales, UK.
Database (Oxford). 2018 Jan 1;2018:bay095. doi: 10.1093/database/bay095.
A set of Elaeis guineensis genes had been generated by combining two gene prediction pipelines: Fgenesh++ developed by Softberry and Seqping by the Malaysian Palm Oil Board. PalmXplore was developed to provide a scalable data repository and a user-friendly search engine system to efficiently store, manage and retrieve the oil palm gene sequences and annotations. Information deposited in PalmXplore includes predicted genes, their genomic coordinates, as well as the annotations derived from external databases, such as Pfam, Gene Ontology and Kyoto Encyclopedia of Genes and Genomes. Information about genes related to important traits, such as those involved in fatty acid biosynthesis (FAB) and disease resistance, is also provided. The system offers Basic Local Alignment Search Tool homology search, where the results can be downloaded or visualized in the oil palm genome browser (MYPalmViewer). PalmXplore is regularly updated offering new features, improvements to genome annotation and new genomic sequences. The system is freely accessible at http://palmxplore.mpob.gov.my.
已通过结合两种基因预测管道（Softberry 开发的 Fgenesh++和马来西亚棕榈油委员会的 Seqping）生成了一组油棕基因。PalmXplore 的开发旨在提供一个可扩展的数据存储库和用户友好的搜索引擎系统，以有效地存储、管理和检索油棕基因序列和注释。PalmXplore 中存储的信息包括预测基因、它们的基因组坐标，以及来自 Pfam、Gene Ontology 和 Kyoto Encyclopedia of Genes and Genomes 等外部数据库的注释。还提供了与重要性状相关的基因信息，例如参与脂肪酸生物合成（FAB）和抗病性的基因。该系统提供基本局部比对搜索工具同源性搜索，结果可以下载或在油棕基因组浏览器（MYPalmViewer）中可视化。PalmXplore 定期更新，提供新功能、基因组注释改进和新的基因组序列。该系统可免费访问，网址为 http://palmxplore.mpob.gov.my。
