Fungal Physiology, Westerdijk Fungal Biodiversity Institute and Fungal Molecular Physiology, Utrecht University, Utrecht, The Netherlands.
Inorganic Chemistry and Catalysis, Debye Institute for Nanomaterials Science, Utrecht University, Utrecht, The Netherlands.
Environ Microbiol. 2018 Nov;20(11):4141-4156. doi: 10.1111/1462-2920.14416. Epub 2018 Oct 18.
White-rot fungi, such as Dichomitus squalens, degrade all wood components and inhabit mixed-wood forests containing both soft- and hardwood species. In this study, we evaluated how D. squalens responded to the compositional differences in softwood [guaiacyl (G) lignin and higher mannan content] and hardwood [syringyl/guaiacyl (S/G) lignin and higher xylan content] using semi-natural solid cultures. Spruce (softwood) and birch (hardwood) sticks were degraded by D. squalens as measured by oxidation of the lignins using 2D-NMR. The fungal response as measured by transcriptomics, proteomics and enzyme activities showed a partial tailoring to wood composition. Mannanolytic transcripts and proteins were more abundant in spruce cultures, while a proportionally higher xylanolytic activity was detected in birch cultures. Both wood types induced manganese peroxidases to a much higher level than laccases, but higher transcript and protein levels of the manganese peroxidases were observed on the G-lignin rich spruce. Overall, the molecular responses demonstrated a stronger adaptation to the spruce rather than birch composition, possibly because D. squalens is mainly found degrading softwoods in nature, which supports the ability of the solid wood cultures to reflect the natural environment.
白腐真菌,如硫磺菌(Dichomitus squalens),可降解所有木材成分,并栖息于含有软木和硬木物种的混交林。在这项研究中,我们通过半天然固体培养,评估了硫磺菌如何响应软木(愈创木基(G)木质素和较高甘露聚糖含量)和硬木(紫丁香基/愈创木基(S/G)木质素和较高木聚糖含量)的组成差异。通过使用 2D-NMR 氧化木质素来衡量,云杉(软木)和桦木(硬木)棒被硫磺菌降解。通过转录组学、蛋白质组学和酶活性来衡量真菌的反应,表明对木材组成有一定的针对性调整。甘露聚糖裂解酶的转录物和蛋白质在云杉培养物中更为丰富,而在桦木培养物中检测到比例更高的木聚糖酶活性。两种木材类型都诱导锰过氧化物酶的产生水平远高于漆酶,但在富含 G 木质素的云杉上观察到锰过氧化物酶的转录物和蛋白质水平更高。总的来说,分子反应表明硫磺菌对云杉而不是桦木的组成有更强的适应性,这可能是因为硫磺菌在自然界中主要被发现降解软木,这支持了固体木材培养物反映自然环境的能力。