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极地链霉菌新种和北方链霉菌新种,从冻土中分离得到。

Streptomyces polaris sp. nov. and Streptomyces septentrionalis sp. nov., isolated from frozen soil.

作者信息

Kamjam Manita, Nopnakorn Potjanicha, Zhang Li, Peng Fang, Deng Zixin, Hong Kui

机构信息

Key Laboratory of Combinatorial Biosynthesis and Drug Discovery (Wuhan University), Ministry of Education, and Wuhan University School of Pharmaceutical Sciences, Wuhan, 430071, People's Republic of China.

China Center for Type Culture Collection, Wuhan, 430071, People's Republic of China.

出版信息

Antonie Van Leeuwenhoek. 2019 Mar;112(3):375-387. doi: 10.1007/s10482-018-1166-x. Epub 2018 Sep 24.

Abstract

Two novel actinomycetes, designated strains ZLN81 and ZLN712, were isolated from a frozen soil sample which was collected from the Arctic region. Chemotaxonomic and morphological characteristics were found to be typical of members of the genus Streptomyces. Based on 16S rRNA gene sequence analyses, the two strains show high similarity with Streptomyces polygonati NEAU-G9 (99.45%, 99.17%) and Streptomyces yanglinensis 1307 (98.17%, 98.10%). DNA-DNA relatedness between each of the strains and their close phylogenetic neighbours showed that they belonged to distinct species. Multilocus sequence analysis (MLSA) using four housekeeping genes (atpD, gyrB, recA and rpoB) for comparing Streptomyces type strains showed that the MLSA distance of strains ZLN81 and ZLN712 to the closely related species was greater than the 0.007 threshold. The cell wall amino acids of the two strains were identified as alanine, glycine, asparagine, ll-diaminopimelic acid and meso-diaminopimelic acid. The whole cell sugars were identified as galactose and glucose for strain ZLN81 and galactose, glucose and xylose for strain ZLN712. The predominant menaquinones were identified as MK-10(H), MK-9(H) and MK-9(H) for strain ZLN81 and MK-9(H), MK-10(H) and MK-9(H) for strain ZLN712. The polar lipid profile of strain ZLN81 was found to contain diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, phosphatidylinositol mannosides and two unidentified phospholipids, while that of strain ZLN712 consisted of diphosphatidylglycerol, phosphatidylethanolamine, a ninhydrin-positive glycophospholipid, phosphatidylinositol mannosides and two unidentified phospholipids. The major fatty acids were identified as iso-C, anteiso-C, C and anteiso-C for strain ZLN81 and iso-C, C, anteiso-C and iso-C for strain ZLN712. The DNA G+C contents were found to be 73.96 and 72.77 mol% for strains ZLN81 and ZLN712, respectively. On the basis of these phenotypic and genotypic data, strains ZLN81 (= CCTCC AA 2018010 = DSM 107255) and ZLN712 (= CCTCC AA 2018011 = DSM 107266) are concluded to represent two novel species of the genus Streptomyces, for which the names Streptomyces polaris sp. nov. and Streptomyces septentrionalis sp. nov. are proposed, respectively.

摘要

从北极地区采集的一份冻土样本中分离出两株新型放线菌,分别命名为ZLN81和ZLN712菌株。经化学分类学和形态学特征鉴定,发现它们具有链霉菌属成员的典型特征。基于16S rRNA基因序列分析,这两株菌与玉竹链霉菌NEAU - G9(相似度为99.45%、99.17%)和杨林链霉菌1307(相似度为98.17%、98.10%)高度相似。各菌株与其近缘系统发育邻株之间的DNA - DNA相关性表明它们属于不同的物种。使用四个管家基因(atpD、gyrB、recA和rpoB)对链霉菌模式菌株进行多基因座序列分析(MLSA),结果显示ZLN81和ZLN712菌株与近缘物种的MLSA距离大于0.007阈值。这两株菌的细胞壁氨基酸被鉴定为丙氨酸、甘氨酸、天冬酰胺、ll - 二氨基庚二酸和内消旋二氨基庚二酸。ZLN81菌株的全细胞糖被鉴定为半乳糖和葡萄糖,ZLN712菌株的全细胞糖被鉴定为半乳糖、葡萄糖和木糖。ZLN81菌株的主要甲基萘醌被鉴定为MK - 10(H)、MK - 9(H)和MK - 9(H),ZLN712菌株的主要甲基萘醌被鉴定为MK - 9(H)、MK - 10(H)和MK - 9(H)。发现ZLN81菌株的极性脂质谱包含双磷脂酰甘油、磷脂酰乙醇胺、磷脂酰肌醇、磷脂酰肌醇甘露糖苷和两种未鉴定的磷脂,而ZLN712菌株的极性脂质谱由双磷脂酰甘油、磷脂酰乙醇胺、一种茚三酮阳性糖脂、磷脂酰肌醇甘露糖苷和两种未鉴定的磷脂组成。ZLN81菌株的主要脂肪酸被鉴定为异-C、anteiso-C、C和anteiso-C,ZLN712菌株的主要脂肪酸被鉴定为异-C、C、anteiso-C和异-C。ZLN81和ZLN712菌株的DNA G + C含量分别为73.96和72.77 mol%。基于这些表型和基因型数据,得出结论:ZLN81(= CCTCC AA 2018010 = DSM 107255)和ZLN712(= CCTCC AA 2018011 = DSM 107266)菌株分别代表链霉菌属的两个新物种,分别提议将其命名为北极链霉菌新种(Streptomyces polaris sp. nov.)和北方链霉菌新种(Streptomyces septentrionalis sp. nov.)。

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