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赖氨酸作为血红素铁配体:三种来自莱茵衣藻的截断血红蛋白的共同特性。

Lysine as a heme iron ligand: A property common to three truncated hemoglobins from Chlamydomonas reinhardtii.

机构信息

T. C. Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, MD 21218, United States.

Chemistry Department, U.S. Naval Academy, Annapolis, MD 21402, United States.

出版信息

Biochim Biophys Acta Gen Subj. 2018 Dec;1862(12):2660-2673. doi: 10.1016/j.bbagen.2018.08.009. Epub 2018 Aug 10.

Abstract

BACKGROUND

The nuclear genome of Chlamydomonas reinhardtii encodes a dozen hemoglobins of the truncated lineage. Four of these, named THB1-4, contain a single ~130-residue globin unit. THB1, which is cytoplasmic and capable of nitric oxide dioxygenation activity, uses a histidine and a lysine as axial ligands to the heme iron. In the present report, we compared THB2, THB3, and THB4 to THB1 to gain structural and functional insights into algal globins.

METHODS

We inspected properties of the globin domains prepared by recombinant means through site-directed mutagenesis, electronic absorption, CD, and NMR spectroscopies, and X-ray crystallography.

RESULTS

Recombinant THB3, which lacks the proximal histidine but has a distal histidine, binds heme weakly. NMR data demonstrate that the recombinant domains of THB2 and THB4 coordinate the ferrous heme iron with the proximal histidine and a lysine from the distal helix. An X-ray structure of ferric THB4 confirms lysine coordination. THB1, THB2, and THB4 have reduction potentials between -65 and -100 mV, are capable of nitric oxide dioxygenation, are reduced at different rates by the diaphorase domain of C. reinhardtii nitrate reductase, and show different response to peroxide treatment.

CONCLUSIONS

Three single-domain C. reinhardtii hemoglobins use lysine as a distal heme ligand in both Fe(III) and Fe(II) oxidation states. This common feature is likely related to enzymatic activity in the management of reactive oxygen species.

GENERAL SIGNIFICANCE

Primary structure analysis of hemoglobins has limited power in the prediction of heme ligation. Experimental determination reveals variations in this essential property across the superfamily.

摘要

背景

莱茵衣藻的核基因组编码十几个截断谱系的血红蛋白。其中四个,命名为 THB1-4,含有一个单一的约 130 个残基的球蛋白单位。THB1 是细胞质的,能够进行一氧化氮双氧合反应,使用组氨酸和赖氨酸作为血红素铁的轴向配体。在本报告中,我们将 THB2、THB3 和 THB4 与 THB1 进行比较,以获得藻类球蛋白的结构和功能见解。

方法

我们通过定点突变、电子吸收、CD 和 NMR 光谱学以及 X 射线晶体学检查了通过重组手段制备的球蛋白结构域的性质。

结果

缺乏近端组氨酸但具有远端组氨酸的重组 THB3 与血红素结合较弱。NMR 数据表明,THB2 和 THB4 的重组结构域用近端组氨酸和来自远端螺旋的赖氨酸配位亚铁血红素铁。铁 THB4 的 X 射线结构证实了赖氨酸的配位。THB1、THB2 和 THB4 的还原电位在-65 至-100 mV 之间,能够进行一氧化氮双氧合反应,被莱茵衣藻硝酸盐还原酶的脱氨酶结构域以不同的速率还原,并对过氧化物处理表现出不同的反应。

结论

三种单一结构域的莱茵衣藻血红蛋白在 Fe(III)和 Fe(II)氧化态下都使用赖氨酸作为远端血红素配体。这种共同特征可能与活性氧物质管理中的酶活性有关。

一般意义

血红蛋白的一级结构分析在预测血红素配位方面的能力有限。实验测定揭示了该基本特性在整个超家族中的变化。

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本文引用的文献

1
Improved Method for the Incorporation of Heme Cofactors into Recombinant Proteins Using Escherichia coli Nissle 1917.
Biochemistry. 2018 May 15;57(19):2747-2755. doi: 10.1021/acs.biochem.8b00242. Epub 2018 Apr 25.
2
Insights into the Active Site of Coproheme Decarboxylase from Listeria monocytogenes.
Biochemistry. 2018 Apr 3;57(13):2044-2057. doi: 10.1021/acs.biochem.8b00186. Epub 2018 Mar 22.
3
Histidine-Lysine Axial Ligand Switching in a Hemoglobin: A Role for Heme Propionates.
Biochemistry. 2018 Feb 6;57(5):631-644. doi: 10.1021/acs.biochem.7b01155. Epub 2018 Jan 10.
4
Nitric oxide production in plants: an update.
J Exp Bot. 2018 Jun 19;69(14):3401-3411. doi: 10.1093/jxb/erx420.
5
Nitric oxide upregulates expression of alternative oxidase 1 in Chlamydomonas reinhardtii.
J Plant Physiol. 2017 Dec;219:123-127. doi: 10.1016/j.jplph.2017.10.004. Epub 2017 Oct 28.
6
Truncated hemoglobin 1 is a new player in Chlamydomonas reinhardtii acclimation to sulfur deprivation.
PLoS One. 2017 Oct 19;12(10):e0186851. doi: 10.1371/journal.pone.0186851. eCollection 2017.
7
Covalent attachment of the heme to Synechococcus hemoglobin alters its reactivity toward nitric oxide.
J Inorg Biochem. 2017 Dec;177:171-182. doi: 10.1016/j.jinorgbio.2017.09.018. Epub 2017 Sep 22.
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Nutrient scavenging and energy management: acclimation responses in nitrogen and sulfur deprived Chlamydomonas.
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9
The biosynthesis of nitrous oxide in the green alga Chlamydomonas reinhardtii.
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10
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