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亚洲西南部棕熊主要种群的种群遗传学

Population genetics of the main population of brown bears in southwest Asia.

作者信息

Ambarlı Hüseyin, Mengüllüoğlu Deniz, Fickel Jörns, Förster Daniel W

机构信息

Department of Wildlife Ecology and Management, Düzce Unviersity, Düzce, Turkey.

Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany.

出版信息

PeerJ. 2018 Sep 21;6:e5660. doi: 10.7717/peerj.5660. eCollection 2018.

DOI:10.7717/peerj.5660
PMID:30258734
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6152452/
Abstract

Genetic studies of the Eurasian brown bear () have so far focused on populations from Europe and North America, although the largest distribution area of brown bears is in Asia. In this study, we reveal population genetic parameters for the brown bear population inhabiting the Grand Kaçkar Mountains (GKM) in the north east of Turkey, western Lesser Caucasus. Using both hair ( = 147) and tissue samples ( = 7) collected between 2008 and 2014, we found substantial levels of genetic variation (10 microsatellite loci). Bear samples (hair) taken from rubbing trees worked better for genotyping than those from power poles, regardless of the year collected. Genotyping also revealed that bears moved between habitat patches, despite ongoing massive habitat alterations and the creation of large water reservoirs. This population has the potential to serve as a genetic reserve for future reintroductions in the Middle East. Due to the importance of the GKM population for on-going and future conservation actions, the impacts of habitat alterations in the region ought to be minimized; e.g., by establishing green bridges or corridors over reservoirs and major roads to maintain habitat connectivity and gene flow among populations in the Lesser Caucasus.

摘要

欧亚棕熊()的遗传研究目前主要集中在欧洲和北美种群,尽管棕熊最大的分布区域在亚洲。在本研究中,我们揭示了土耳其东北部小高加索山脉西部大卡卡尔山脉(GKM)棕熊种群的群体遗传参数。利用2008年至2014年间收集的毛发样本(n = 147)和组织样本(n = 7),我们发现了较高水平的遗传变异(10个微卫星位点)。无论采集年份如何,从擦树采集的熊样本(毛发)比从电线杆采集的样本在基因分型方面效果更好。基因分型还表明,尽管栖息地持续发生大规模改变以及建造了大型水库,但熊仍在不同栖息地斑块之间移动。该种群有可能作为未来中东地区重新引入计划的遗传储备。鉴于GKM种群对当前和未来保护行动的重要性,该地区栖息地改变的影响应降至最低;例如,通过在水库和主要道路上建立绿色桥梁或走廊,以维持小高加索地区种群间的栖息地连通性和基因流动。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8807/6152452/f581a7fa34c5/peerj-06-5660-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8807/6152452/cd30c69d9b20/peerj-06-5660-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8807/6152452/f581a7fa34c5/peerj-06-5660-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8807/6152452/cd30c69d9b20/peerj-06-5660-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8807/6152452/f581a7fa34c5/peerj-06-5660-g002.jpg

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本文引用的文献

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The program structure does not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem.当采样不均匀时,程序结构不能可靠地恢复正确的种群结构:子采样和新的估计器缓解了这个问题。
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俄罗斯的混合和基因流动对恢复中的北欧棕熊(Ursus arctos)的影响。
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Allelematch: an R package for identifying unique multilocus genotypes where genotyping error and missing data may be present.Allelematch:一个用于识别存在基因分型错误和缺失数据的独特多位点基因型的 R 包。
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Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows.Arlequin 套件 ver 3.5:一系列在 Linux 和 Windows 下运行的新程序,用于进行群体遗传学分析。
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