Hug Laura A
Department of Biology, University of Waterloo, Waterloo, Ontario, Canada.
mSystems. 2018 Sep 25;3(5). doi: 10.1128/mSystems.00185-18. eCollection 2018 Sep-Oct.
Predicting the total number of microbial cells on Earth and exploring the full diversity of life are fundamental research concepts that have undergone paradigm shifts in the genomic era. In this issue, Lloyd and colleagues (K. G. Lloyd, A. D. Steen, J. L. Ladau, J. Yin, and L. Crosby, mSystems 3:e00055-18, https://doi.org/10.1128/mSystems.00055-18, 2018) present results that combine these two concepts by estimating the total diversity of all cells from Earth's environments. Leveraging publicly available amplicon, metagenomic, and metatranscriptomic datasets, they determined that nearly all environments are dominated by uncultured lineages, with the exception of humans and human-associated habitats. They define a new concept: phylogenetically diverse noncultured cells (PDNC). Unlike viable but nonculturable cells (VBNC), PDNC are microorganisms for which traditional isolation techniques may never succeed. Lloyd et al. estimate that the majority of microorganisms in Earth's ecosystems may be PDNC and conclude that culture-independent methods combined with innovative culturing techniques may be required to understand the ecology and physiology of these abundant and divergent microorganisms.
预测地球上微生物细胞的总数以及探索生命的全部多样性是基因组时代经历了范式转变的基础研究概念。在本期中,劳埃德及其同事(K.G.劳埃德、A.D.斯汀、J.L.拉道、J.尹和L.克罗斯比,《mSystems》3:e00055 - 18,https://doi.org/10.1128/mSystems.00055 - 18,2018年)通过估计地球环境中所有细胞的总多样性,展示了结合这两个概念的研究结果。他们利用公开可用的扩增子、宏基因组和宏转录组数据集,确定除了人类和与人类相关的栖息地外,几乎所有环境都由未培养的谱系主导。他们定义了一个新概念:系统发育多样的未培养细胞(PDNC)。与活的但不可培养的细胞(VBNC)不同,PDNC是传统分离技术可能永远无法成功分离的微生物。劳埃德等人估计,地球生态系统中的大多数微生物可能是PDNC,并得出结论,可能需要将非培养方法与创新培养技术相结合,才能了解这些数量众多且差异巨大的微生物的生态学和生理学特性。