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适用于实时磁共振图像处理的现场可编程门阵列上的并行二维快速傅里叶变换实现

Parallel 2D FFT implementation on FPGA suitable for real-time MR image processing.

作者信息

Li Limin, Wyrwicz Alice M

机构信息

Center for Basic MR Research, NorthShore University HealthSystem Research Institute, 1033 University Place Suite 100, Evanston, Illinois 60201, USA.

出版信息

Rev Sci Instrum. 2018 Sep;89(9):093706. doi: 10.1063/1.5019846.

Abstract

We report the design and implementation of a parallel two-dimensional fast Fourier transform (2D FFT) algorithm on a Field Programmable Gate Array (FPGA) for real-time MR image processing. Although a number of architectures of 2D FFT hardware processors have been reported, these generic processors or IP cores are not always effective for processing MRI data. The key feature of our design is that our processors are customized solely for real-time MRI applications. We demonstrate that by considering the unique features of real-time MRI data streams, we were able to develop and implement the 2D FFT processors that are resource-efficient and flexible enough to handle both regular and irregular data. Using a data-driven approach, we were able to simplify the inter-processor data communication while maintaining data synchronization without a synchronous clock signal bus and complex interconnection network. We experimentally verified our designs by processing multi-slice image data sets with 128 × 128 and 256 × 256 in-plane resolution. The results demonstrate the effectiveness of our 2D FFT processors and show that image reconstruction can be accelerated in proportion to the parallel processing factor. We achieved image-reconstruction processing rates up to 3000 and 800 slices per second for images with 128 × 128 and 256 × 256 in-plane resolution, respectively. The results also indicate that the image-reconstruction acceleration is primarily limited by the speed of the data transfer between the FPGA device and external sensors.

摘要

我们报告了一种用于实时磁共振成像(MR)图像处理的现场可编程门阵列(FPGA)上的并行二维快速傅里叶变换(2D FFT)算法的设计与实现。尽管已经报道了许多二维快速傅里叶变换硬件处理器的架构,但这些通用处理器或知识产权(IP)核对于处理磁共振成像数据并不总是有效的。我们设计的关键特性在于我们的处理器是专门为实时磁共振成像应用定制的。我们证明,通过考虑实时磁共振成像数据流的独特特性,我们能够开发并实现资源高效且足够灵活以处理常规和不规则数据的二维快速傅里叶变换处理器。使用数据驱动方法,我们能够简化处理器间的数据通信,同时在没有同步时钟信号总线和复杂互连网络的情况下保持数据同步。我们通过处理平面分辨率为128×128和256×256的多切片图像数据集对我们的设计进行了实验验证。结果证明了我们二维快速傅里叶变换处理器的有效性,并表明图像重建可以与并行处理因子成比例地加速。对于平面分辨率为128×128和256×256的图像,我们分别实现了高达每秒3000和800切片的图像重建处理速率。结果还表明,图像重建加速主要受FPGA设备与外部传感器之间数据传输速度的限制。

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