Saeng-In Patcharin, Phongsopitanun Wongsakorn, Savarajara Ancharida, Tanasupawat Somboon
1Department of Microbiology, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand.
2Department of Biology, Faculty of Science, Ramkhamhaeng University, Bangkok 10240, Thailand.
Int J Syst Evol Microbiol. 2018 Nov;68(11):3641-3646. doi: 10.1099/ijsem.0.003052. Epub 2018 Oct 10.
A new actinobacterial strain, LCR6-01, was isolated from a lichen sample collected from Chiang Rai Province, Thailand. Its taxonomic position was determined using a polyphasic approach. The strain had morphological characteristics and chemotaxonomic properties identical to those of members of the genus Streptomyces. The predominant menaquinones were MK-9(H6) and MK-9(H8). The major fatty acids were anteiso-C15 : 0, iso-C15 : 0, iso-C16 : 0, iso-C14 : 0 and C16 : 0. The polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, an unidentified phosphoglycolipid, an unidentified phospholipid and an unidentified lipid. The genomic DNA G+C content was 74.5 mol%. Phylogenetic analysis based on 16S rRNA gene sequences suggested that the strain belonged to the genus Streptomyces. The strain showed highest 16S rRNA gene sequence similarity to Streptomyces palmae TBRC 1999 (98.6 %), Streptomyces misionensis JCM 4497 (98.6 %), Streptomyces matensis JCM 4268 (98.5 %), Streptomyces althioticus KCTC 9752 (98.5 %) and Streptomyces wuyuanensis KCTC 29112 (98.4 %). DNA-DNA relatedness values among the strain and closely related Streptomyces species were below 70 %. On the basis of the phenotypic characteristics and genotypic distinctiveness, strain LCR6-01 is considered to represent a novel species of the genus Streptomyces, for which the name Streptomyces lichenis sp. nov. is proposed. The type strain is LCR6-01 (=KCTC 39908=TISTR 2500).
从泰国清莱府采集的地衣样本中分离出一株新的放线菌菌株LCR6 - 01。采用多相分类法确定其分类地位。该菌株的形态特征和化学分类特性与链霉菌属成员相同。主要的甲基萘醌是MK - 9(H6)和MK - 9(H8)。主要脂肪酸为anteiso - C15 : 0、iso - C15 : 0、iso - C16 : 0、iso - C14 : 0和C16 : 0。极性脂为双磷脂酰甘油、磷脂酰乙醇胺、磷脂酰甘油、一种未鉴定的磷酸糖脂、一种未鉴定的磷脂和一种未鉴定的脂类。基因组DNA的G + C含量为74.5mol%。基于16S rRNA基因序列的系统发育分析表明该菌株属于链霉菌属。该菌株与棕榈链霉菌TBRC 1999(98.6 %)、米西链霉菌JCM 4497(98.6 %)、马塔链霉菌JCM 4268(98.5 %)、硫链霉菌KCTC 9752(98.5 %)和婺源链霉菌KCTC 29112(98.4 %)的16S rRNA基因序列相似度最高。该菌株与密切相关的链霉菌物种之间的DNA - DNA相关性值低于70 %。基于表型特征和基因型独特性,菌株LCR6 - 01被认为代表链霉菌属的一个新物种,为此提出名为地衣链霉菌(Streptomyces lichenis sp. nov.)。模式菌株为LCR6 - 01(=KCTC 39908=TISTR 2500)。