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与肾细胞癌相关的八个关键微小RNA的鉴定:一项荟萃分析。

Identification of eight key miRNAs associated with renal cell carcinoma: A meta-analysis.

作者信息

Ying Guanghui, Wu Ruilan, Xia Min, Fei Xiapei, He Qi En, Zha Chenqin, Wu Fuquan

机构信息

Department of Nephrology, Beilun District People's Hospital of Zhejiang Province, Ningbo, Zhejiang 315800, P.R. China.

Postanesthetic Care Unit, Ningbo Medical Center Lihuili Eastern Hospital, Ningbo, Zhejiang 315000, P.R. China.

出版信息

Oncol Lett. 2018 Nov;16(5):5847-5855. doi: 10.3892/ol.2018.9384. Epub 2018 Sep 3.

Abstract

Renal cell carcinoma (RCC) is the most common renal carcinoma in the human kidney. To date, to the best of our knowledge, there are no biomarkers for the early monitoring and diagnosis of RCC patients. The present study aimed to develop deeper insight into the molecular mechanisms of microRNAs (miRNAs/miRs) in the regulation of RCC development and to reveal candidate miRNA biomarkers in human RCC. A meta-analysis was used to integrate the published and independent RCC miRNA expression profiling investigations that compared the miRNA expression profiles in RCC samples with control samples. The meta-signature miRNA target genes were then predicted in TargetScan. The predicted targets were further analyzed using Gene Ontology and pathway enrichment analysis with the Database for Annotation, Visualization and Integrated Discovery online tool, and then the transcription factors of meta-signature miRNA target genes were identified in Tfacts. A total of 7 publicly available and independent RCC miRNA expression profiling datasets were collected, and 2 upregulated (hsa-miR-155-5p and hsa-miR-210-5p) and 6 downregulated (hsa-miR-138-5p, hsa-miR-141-5p, hsa-miR-200c-5p, hsa-miR-362-5p, hsa-miR-363-5p and hsa-miR-429) meta-signature miRNAs in renal carcinoma were identified. The targeted gene enrichment analysis indicated that the meta-signature miRNAs may influence several pathways that participate in cancerogenesis, including the 'rap1 signaling pathway', 'renal cell carcinoma' and 'microRNAs in cancer'. Overall, the present meta-analysis identified 2 upregulated and 6 downregulated meta-signature miRNAs from 7 renal carcinoma datasets, the dysregulated miRNAs that may contribute to kidney carcinoma development. This research may reveal candidate miRNA biomarkers in human RCC.

摘要

肾细胞癌(RCC)是人类肾脏中最常见的肾癌。据我们所知,迄今为止尚无用于肾细胞癌患者早期监测和诊断的生物标志物。本研究旨在更深入地了解微小RNA(miRNA/miR)在肾细胞癌发生发展调控中的分子机制,并揭示人类肾细胞癌中的候选miRNA生物标志物。我们进行了一项荟萃分析,整合已发表的独立肾细胞癌miRNA表达谱研究,这些研究比较了肾细胞癌样本与对照样本中的miRNA表达谱。然后在TargetScan中预测荟萃特征miRNA的靶基因。使用在线工具注释、可视化和综合发现数据库(Database for Annotation, Visualization and Integrated Discovery)对预测的靶标进行基因本体论和通路富集分析,随后在Tfacts中鉴定荟萃特征miRNA靶基因的转录因子。共收集了7个公开可用的独立肾细胞癌miRNA表达谱数据集,鉴定出2个上调的(hsa-miR-155-5p和hsa-miR-210-5p)和6个下调的(hsa-miR-138-5p、hsa-miR-141-5p、hsa-miR-200c-5p、hsa-miR-362-5p、hsa-miR-363-5p和hsa-miR-429)肾癌荟萃特征miRNA。靶向基因富集分析表明,荟萃特征miRNA可能影响参与肿瘤发生的多个通路,包括“rap1信号通路”、“肾细胞癌”和“癌症中的微小RNA”。总体而言,本荟萃分析从7个肾癌数据集中鉴定出2个上调和6个下调的荟萃特征miRNA,这些失调的miRNA可能促成肾癌的发展。本研究可能揭示人类肾细胞癌中的候选miRNA生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/22dc/6176358/91ed20b4d3b4/ol-16-05-5847-g00.jpg

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