J Phys Chem B. 2018 Nov 8;122(44):10086-10096. doi: 10.1021/acs.jpcb.8b07919. Epub 2018 Oct 24.
Ras protein colocalization at the plasma membrane is implicated in the activation of signaling cascades that promote cell growth, survival, and motility. However, the mechanisms that underpin Ras self-association remain unclear. We use molecular dynamics simulations to show how basic and hydrophobic components of the disordered C-terminal membrane tether of K-Ras4B combine to regulate its membrane interactions. Specifically, anionic lipids attract lysine residues to the membrane surface, thereby splitting the peptide population into two states that exchange on the microsecond time scale. These states differ in the membrane insertion of a methionine residue, which is influenced by local membrane composition. As a result, these states may impose context-dependent biases on the disposition of Ras' signaling domain, with possible implications for the accessibility of its effector binding surfaces. We investigate Ras' ability to nanocluster by fly-casting for patches of anionic lipids and find that while anionic lipids promote the intermolecular association of K-Ras4B membrane tethers, at short range this appears to be a passive process in which anionic lipids electrostatically screen these cationic peptides to mitigate their natural repulsion. Together with the sub-microsecond stability of interpeptide contacts, this result suggests that experimentally observed K-Ras4B nanoclustering is not driven by direct intermolecular contact of its membrane tethers.
Ras 蛋白在质膜上的共定位与促进细胞生长、存活和运动的信号级联的激活有关。然而,支持 Ras 自缔合的机制仍不清楚。我们使用分子动力学模拟来展示 K-Ras4B 无规 C 端膜系绳的碱性和疏水性成分如何结合起来调节其膜相互作用。具体来说,阴离子脂质吸引赖氨酸残基到膜表面,从而将肽群体分裂成两种在微秒时间尺度上交换的状态。这些状态在甲硫氨酸残基的膜插入方面存在差异,这受局部膜组成的影响。因此,这些状态可能对 Ras 信号结构域的构象施加上下文相关的偏向,这可能对其效应子结合表面的可及性产生影响。我们通过飞 casting 寻找阴离子脂质的斑块来研究 Ras 形成纳米簇的能力,发现虽然阴离子脂质促进了 K-Ras4B 膜系绳的分子间缔合,但在短程范围内,这似乎是一个被动过程,其中阴离子脂质静电屏蔽这些阳离子肽以减轻它们的自然排斥。与肽间接触的亚微秒稳定性相结合,这一结果表明,实验观察到的 K-Ras4B 纳米簇形成不是由其膜系绳的直接分子间接触驱动的。