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A Genomic View of Alternative Splicing of Long Non-coding RNAs during Rice Seed Development Reveals Extensive Splicing and lncRNA Gene Families.水稻种子发育过程中长链非编码RNA可变剪接的基因组学视角揭示了广泛的剪接和长链非编码RNA基因家族。
Front Plant Sci. 2018 Feb 7;9:115. doi: 10.3389/fpls.2018.00115. eCollection 2018.
3
Identification and molecular characterization of Dof transcription factor gene family preferentially expressed in developing spikes of L.在L.发育中的穗中优先表达的Dof转录因子基因家族的鉴定与分子特征分析
3 Biotech. 2018 Feb;8(2):82. doi: 10.1007/s13205-017-1068-z. Epub 2018 Jan 16.
4
Modeling of the jasmonate signaling pathway in Arabidopsis thaliana with respect to pathophysiology of Alternaria blight in Brassica.拟南芥茉莉酸信号通路的建模及其在芸薹属作物交链格孢菌灰霉病病理生理学中的作用。
Sci Rep. 2017 Dec 1;7(1):16790. doi: 10.1038/s41598-017-16884-3.
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QTL mapping and molecular characterization of the classical D locus controlling seed and flower color in Linum usitatissimum (flax).经典 D 基因座控制亚麻(Linum usitatissimum)种子和花色的 QTL 作图和分子特征。
Sci Rep. 2017 Nov 16;7(1):15751. doi: 10.1038/s41598-017-11565-7.
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Metabolomic analysis of tomato seed germination.番茄种子萌发的代谢组学分析
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Embryonic epigenetic reprogramming by a pioneer transcription factor in plants.植物中先驱转录因子对胚胎表观遗传重编程。
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Transcriptomic Analysis of Seed Coats in Yellow-Seeded Reveals Novel Genes That Influence Proanthocyanidin Biosynthesis.黄籽种皮的转录组分析揭示了影响原花青素生物合成的新基因。
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The transcriptome of the developing grain: a resource for understanding seed development and the molecular control of the functional and nutritional properties of wheat.发育中谷物的转录组:理解种子发育和小麦功能及营养特性的分子调控的资源。
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A proteomic approach to guarana seed and pericarp maturation.一种用于瓜拉那种子和果皮成熟过程的蛋白质组学方法。
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种子的系统生物学:解读生化种子工厂保障营养安全的秘密。

Systems biology of seeds: decoding the secret of biochemical seed factories for nutritional security.

作者信息

Kumar Anil, Pathak Rajesh Kumar, Gayen Aranyadip, Gupta Supriya, Singh Manoj, Lata Charu, Sharma Himanshu, Roy Joy Kumar, Gupta Sanjay Mohan

机构信息

Rani Lakshmi Bai Central Agricultural University, Jhansi, Uttar Pradesh 284003 India.

2Department of Molecular Biology and Genetic Engineering, College of Basic Sciences and Humanities, G. B. Pant University of Agriculture and Technology, Pantnagar, Uttarakhand 263145 India.

出版信息

3 Biotech. 2018 Nov;8(11):460. doi: 10.1007/s13205-018-1483-9. Epub 2018 Oct 24.

DOI:10.1007/s13205-018-1483-9
PMID:30370201
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6200710/
Abstract

Seeds serve as biochemical factories of nutrition, processing, bio-energy and storage related important bio-molecules and act as a delivery system to transmit the genetic information to the next generation. The research pertaining towards delineating the complex system of regulation of genes and pathways related to seed biology and nutrient partitioning is still under infancy. To understand these, it is important to know the genes and pathway(s) involved in the homeostasis of bio-molecules. In recent past with the advent and advancement of modern tools of genomics and genetic engineering, multi-layered 'omics' approaches and high-throughput platforms are being used to discern the genes and proteins involved in various metabolic, and signaling pathways and their regulations for understanding the molecular genetics of biosynthesis and homeostasis of bio-molecules. This can be possible by exploring systems biology approaches via the integration of omics data for understanding the intricacy of seed development and nutrient partitioning. These information can be exploited for the improvement of biologically important chemicals for large-scale production of nutrients and nutraceuticals through pathway engineering and biotechnology. This review article thus describes different omics tools and other branches that are merged to build the most attractive area of research towards establishing the seeds as biochemical factories for human health and nutrition.

摘要

种子充当营养、加工、生物能源和储存相关重要生物分子的生化工厂,并作为一种传递系统将遗传信息传递给下一代。关于描绘与种子生物学和养分分配相关的基因和途径的复杂调控系统的研究仍处于起步阶段。为了理解这些,了解参与生物分子稳态的基因和途径很重要。最近,随着现代基因组学和基因工程工具的出现和发展,多层“组学”方法和高通量平台被用于识别参与各种代谢和信号通路的基因和蛋白质及其调控,以了解生物分子生物合成和稳态的分子遗传学。通过整合组学数据探索系统生物学方法来理解种子发育和养分分配的复杂性,这是可行的。这些信息可用于通过途径工程和生物技术改进具有生物学重要性的化学品,以大规模生产营养物质和营养保健品。因此,这篇综述文章描述了不同的组学工具和其他分支,它们相互融合,构建了一个最具吸引力的研究领域,旨在将种子确立为促进人类健康和营养的生化工厂。