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关于多元方法在生物网络数据分析中的应用

On the Use of Multivariate Methods for Analysis of Data from Biological Networks.

作者信息

Vargason Troy, Howsmon Daniel P, McGuinness Deborah L, Hahn Juergen

机构信息

Department of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.

Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.

出版信息

Processes (Basel). 2017;5(3). doi: 10.3390/pr5030036. Epub 2017 Jul 3.

Abstract

Data analysis used for biomedical research, particularly analysis involving metabolic or signaling pathways, is often based upon univariate statistical analysis. One common approach is to compute means and standard deviations individually for each variable or to determine where each variable falls between upper and lower bounds. Additionally, -values are often computed to determine if there are differences between data taken from two groups. However, these approaches ignore that the collected data are often correlated in some form, which may be due to these measurements describing quantities that are connected by biological networks. Multivariate analysis approaches are more appropriate in these scenarios, as they can detect differences in datasets that the traditional univariate approaches may miss. This work presents three case studies that involve data from clinical studies of autism spectrum disorder that illustrate the need for and demonstrate the potential impact of multivariate analysis.

摘要

用于生物医学研究的数据分析,尤其是涉及代谢或信号通路的分析,通常基于单变量统计分析。一种常见的方法是分别计算每个变量的均值和标准差,或者确定每个变量落在上下限之间的位置。此外,通常会计算p值以确定两组数据之间是否存在差异。然而,这些方法忽略了所收集的数据通常以某种形式相关,这可能是由于这些测量描述了由生物网络连接的量。在这些情况下,多变量分析方法更合适,因为它们可以检测传统单变量方法可能遗漏的数据集中的差异。这项工作展示了三个案例研究,这些研究涉及自闭症谱系障碍的临床研究数据,说明了多变量分析的必要性并展示了其潜在影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4c1a/6217848/66d4dbe832ed/nihms967057f1.jpg

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