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评估量子力学/分子力学计算中卟吩噁嗪吸收光谱和三重态态密度的构形采样。

Assessing Configurational Sampling in the Quantum Mechanics/Molecular Mechanics Calculation of Temoporfin Absorption Spectrum and Triplet Density of States.

机构信息

Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Str. 17, 1090 Vienna, Austria.

Departamento de Química Universidad Autónoma de Madrid Francisco Tomas y Valiente, 7, Cantoblanco, 28049 Madrid, Spain.

出版信息

Molecules. 2018 Nov 9;23(11):2932. doi: 10.3390/molecules23112932.

Abstract

The absorption properties of Temoporfin, a second-generation photosensitizer employed in photodynamic therapy, are calculated with an electrostatic-embedding quantum mechanics/molecular mechanics (QM/MM) scheme in methanol. The suitability of several ensembles of geometries generated by different sampling techniques, namely classical-molecular-dynamics (MD) and QM/MM-MD thermal sampling, Wigner quantum sampling and a hybrid protocol, which combines the thermal and quantum approaches, is assessed. It is found that a QM description of the chromophore during the sampling is needed in order to achieve a good agreement with respect to the experimental spectrum. Such a good agreement is obtained with both QM/MM-MD and Wigner samplings, demonstrating that a proper description of the anharmonic motions of the chromophore is not relevant in the computation of the absorption properties. In addition, it is also found that solvent organization is a rather fast process and a long sampling is not required. Finally, it is also demonstrated that the same exchange-correlation functional should be employed in the sampling and in the computation of the excited states properties to avoid unphysical triplet states with relative energies close or below 0 eV.

摘要

在甲醇中,采用静电嵌入量子力学/分子力学(QM/MM)方案计算了第二代光动力治疗用光敏剂 Temoporfin 的吸收特性。评估了几种由不同采样技术生成的几何形状集合的适用性,即经典分子动力学(MD)和 QM/MM-MD 热采样、Wigner 量子采样以及一种组合了热和量子方法的混合协议。结果发现,需要在采样过程中对发色团进行 QM 描述,才能与实验光谱达到良好的一致性。QM/MM-MD 和 Wigner 采样都可以获得这种良好的一致性,这表明在计算吸收特性时,对发色团的非谐运动进行适当描述并不相关。此外,还发现溶剂组织是一个相当快速的过程,不需要进行长时间的采样。最后,还证明在采样和激发态性质计算中应使用相同的交换相关泛函,以避免具有接近或低于 0 eV 的相对能量的非物理三重态。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f36e/6278509/087d83465e85/molecules-23-02932-sch001.jpg

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