Suppr超能文献

对两种亚洲豆科作物(赤豆和绿豆)WRKY 转录因子的全基因组比较分析。

Comparative genome-wide analysis of WRKY transcription factors in two Asian legume crops: Adzuki bean and Mung bean.

机构信息

Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati, 781039, India.

Japan International Research Center for Agricultural Sciences Biological Resources, Post-Harvest Division, 1-1 Ohwashi, Tsukuba, Ibaraki, 305-8686, Japan.

出版信息

Sci Rep. 2018 Nov 19;8(1):16971. doi: 10.1038/s41598-018-34920-8.

Abstract

The seminal participation of WRKY transcription factors in plant development, metabolism and in the governance of defense mechanism implicated their gaining importance for genomic and functional studies. The recent release of draft genome sequences of two legume crops, Adzuki bean (Vigna angularis) and Mung bean (Vigna radiata) has paved the way for characterization of WRKY gene family in these crops. We found 84 WRKY genes in Adzuki bean (VaWRKY) and 85 WRKY genes in Mung bean (VrWRKY). Based on the phylogenetic analysis, VaWRKY genes were classified into three groups with 15 members in Group I, 56 members in Group II, and 13 members in Group III, which was comparable to VrWRKY distribution in Mung bean, 16, 56 and 13 members in Group I, II and III, respectively. The few tandem and segmental duplication events suggested that recent duplication plays no prominent role in the expansion VaWRKY and VrWRKY genes. The illustration of gene-structure and their encoded protein-domains further revealed the nature of WRKY proteins. Moreover, the identification of abiotic or biotic stress-responsive cis-regulatory elements in the promoter regions of some WRKY genes provides fundamental insights for their further implementation in stress-tolerance and genetic improvement of agronomic traits.

摘要

WRKY 转录因子在植物发育、代谢和防御机制调控中的重要作用,使其成为基因组和功能研究的重点。两种豆科作物——绿豆(Vigna radiata)和红豆(Vigna angularis)的基因组草图的发布,为这些作物中 WRKY 基因家族的特征分析铺平了道路。我们在红豆中发现了 84 个 WRKY 基因(VaWRKY),在绿豆中发现了 85 个 WRKY 基因(VrWRKY)。基于系统发育分析,VaWRKY 基因可分为三组,其中第一组有 15 个成员,第二组有 56 个成员,第三组有 13 个成员,这与绿豆中 VrWRKY 的分布相似,分别有 16、56 和 13 个成员在第一、二和三组中。少数串联和片段重复事件表明,近期的复制在 VaWRKY 和 VrWRKY 基因的扩展中没有起到突出作用。基因结构及其编码蛋白结构域的说明进一步揭示了 WRKY 蛋白的性质。此外,一些 WRKY 基因启动子区域中生物或非生物胁迫响应顺式调控元件的鉴定,为其在耐胁迫和遗传改良农业性状中的进一步应用提供了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a799/6243003/994c65d00ed2/41598_2018_34920_Fig1_HTML.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验