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在巴西南部生态过渡带中生长的本土含羞草根瘤菌的系统发育多样性。

Phylogenetic diversity of rhizobia nodulating native Mimosa gymnas grown in a South Brazilian ecotone.

机构信息

Departamento de Biologia Estrutural, Molecular e Genética, Universidade Estadual de Ponta Grossa, Avenida General Carlos Cavalcanti, 4748 - Uvaranas, C.P. 6001, Ponta Grossa, PR, 84030-900, Brazil.

Depto. de Engenharia Florestal, Universidade Federal do Paraná, Av. Pref. Lothário Meissner, 900, Curitiba, 80210-170, PR, Brazil.

出版信息

Mol Biol Rep. 2019 Feb;46(1):529-540. doi: 10.1007/s11033-018-4506-z. Epub 2018 Nov 28.

Abstract

Floristic surveys performed in "Campos Gerais" (Paraná, Brazil), an ecotone of Mata Atlântica and Cerrado biomes, highlights the richness and relative abundance of the family Fabaceae and point out the diversity and endemism of Mimosa spp. Our study reports the genetic diversity of rhizobia isolated from root nodules of native/endemic Mimosa gymnas Barneby in three areas of Guartelá State Park, an important conservation unit of "Campos Gerais". Soils of the sample areas were characterized as sandy, acid, poor in nutrients and organic matter. The genetic variability among the isolates was revealed by BOX-PCR genomic fingerprinting. Phylogeny based on 16S rRNA gene grouped the strains in a large cluster including Paraburkholderia nodosa and P. bannensis, while recA-gyrB phylogeny separated the strains in two groups: one including P. nodosa and the other without any described Paraburkholderia species. MLSA confirmed the separate position of this second group of strains within the genus Paraburkholderia and the nucleotide identity of the five concatened housekeeping genes was 95.9% in relation to P. nodosa BR 3437. Phylogram based on symbiosis-essential nodC gene was in agreement with 16S rRNA analysis. Our molecular phylogenetic analysis support that Paraburkholderia are the main symbionts of native Mimosa in specific edaphic conditions found in South America and reveal the importance of endemic/native leguminous plants as reservoirs of novel rhizobial species.

摘要

在大西洋森林和塞拉多生物群落的生态过渡区“坎波斯热赖斯”(巴西巴拉那州)进行的植物区系调查强调了豆科植物的丰富度和相对丰度,并指出了含羞草属的多样性和特有性。我们的研究报告了从瓜尔塔莱国家公园三个地区的本地/特有含羞草 Gymnas 根瘤中分离的根瘤菌的遗传多样性,瓜尔塔莱国家公园是“坎波斯热赖斯”的一个重要保护单位。样本区的土壤为沙质、酸性、养分和有机质贫乏。通过 BOX-PCR 基因组指纹图谱揭示了分离株之间的遗传变异性。基于 16S rRNA 基因的系统发育将菌株分为一大簇,包括拟杆菌 nodosa 和 P. bannensis,而 recA-gyrB 系统发育将菌株分为两组:一组包括 P. nodosa,另一组则没有任何描述的拟杆菌种。MLSA 证实了这第二组菌株在拟杆菌属内的单独位置,并且五个连接的看家基因的核苷酸同一性与 P. nodosa BR 3437 相关为 95.9%。基于共生必需 nodC 基因的系统发育树与 16S rRNA 分析一致。我们的分子系统发育分析支持拟杆菌是南美特定土壤条件下本地含羞草的主要共生体,并揭示了特有/本地豆科植物作为新型根瘤菌物种储库的重要性。

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