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数据库驱动的方法在薄荷科(Lamiaceae)中鉴定出其他二萜合酶的活性。

A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae).

机构信息

Departments of Biochemistry and Molecular Biology, East Lansing, Michigan 48824.

Departments of Biochemistry and Molecular Biology, East Lansing, Michigan 48824; Pharmacology and Toxicology, East Lansing, Michigan 48824.

出版信息

J Biol Chem. 2019 Jan 25;294(4):1349-1362. doi: 10.1074/jbc.RA118.006025. Epub 2018 Nov 29.

DOI:10.1074/jbc.RA118.006025
PMID:30498089
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6349103/
Abstract

Members of the mint family (Lamiaceae) accumulate a wide variety of industrially and medicinally relevant diterpenes. We recently sequenced leaf transcriptomes from 48 phylogenetically diverse Lamiaceae species. Here, we summarize the available chemotaxonomic and enzyme activity data for diterpene synthases (diTPSs) in the Lamiaceae and leverage the new transcriptomes to explore the diTPS sequence and functional space. Candidate genes were selected with an intent to evenly sample the sequence homology space and to focus on species in which diTPS transcripts were found, yet from which no diterpene structures have been previously reported. We functionally characterized nine class II diTPSs and 10 class I diTPSs from 11 distinct plant species and found five class II activities, including two novel activities, as well as a spectrum of class I activities. Among the class II diTPSs, we identified a -cleroda-4(18),13-dienyl diphosphate synthase from , catalyzing the likely first step in the biosynthesis of a variety of insect-antifeedant compounds. Among the class I diTPSs was a palustradiene synthase from , leading to the discovery of specialized diterpenes in that species. Our results provide insights into the diversification of diterpene biosynthesis in the mint family and establish a comprehensive foundation for continued investigation of diterpene biosynthesis in the Lamiaceae.

摘要

唇形科(Lamiaceae)的成员积累了各种各样的工业和药用相关的二萜。我们最近对 48 种系统发育多样的唇形科物种的叶片转录组进行了测序。在这里,我们总结了唇形科中二萜合酶(diTPS)的可用化学分类和酶活性数据,并利用新的转录组来探索 diTPS 序列和功能空间。候选基因是根据均匀采样序列同源空间的意图选择的,并且专注于发现 diTPS 转录本的物种,但尚未从这些物种中报道过二萜结构。我们从 11 个不同的植物物种中对 9 个 II 类 diTPSs 和 10 个 I 类 diTPSs 进行了功能表征,发现了 5 种 II 类活性,包括 2 种新活性,以及一系列 I 类活性。在 II 类 diTPSs 中,我们从 鉴定出一种 -cleroda-4(18),13-dienyl diphosphate synthase,它催化多种昆虫拒食化合物生物合成的可能的第一步。在 I 类 diTPSs 中,有一种来自 的 palustradiene synthase,导致该物种中发现了特殊的二萜。我们的研究结果为了解唇形科中二萜生物合成的多样化提供了新的见解,并为进一步研究唇形科中二萜生物合成奠定了全面的基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4abc/6349103/b410762d5871/zbc0041999570008.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4abc/6349103/b410762d5871/zbc0041999570008.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4abc/6349103/da88d2d99f0d/zbc0041999570002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4abc/6349103/87ef67c69df5/zbc0041999570003.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4abc/6349103/d98c2937b33a/zbc0041999570005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4abc/6349103/1586cb3dc8fa/zbc0041999570006.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4abc/6349103/b410762d5871/zbc0041999570008.jpg

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