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KCNK2 区域的 eQTL 对脑沟变宽有影响:来自有神经影像学数据的 15597 名英国生物银行参与者的证据。

eQTL of KCNK2 regionally influences the brain sulcal widening: evidence from 15,597 UK Biobank participants with neuroimaging data.

机构信息

UNATI, Institut Joliot, CEA, Université Paris-Saclay, Neurospin, CEA Saclay, Neurospin Bâtiment 145, 91191, Gif-sur-Yvette Cedex, France.

Institut National de la Santé et de la Recherche Médicale, INSERM Unit 1000 "Neuroimaging and Psychiatry", Faculté de médecine, Université Paris-Sud, Le Kremlin-Bicêtre, France.

出版信息

Brain Struct Funct. 2019 Mar;224(2):847-857. doi: 10.1007/s00429-018-1808-9. Epub 2018 Dec 5.

DOI:10.1007/s00429-018-1808-9
PMID:30519892
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6420450/
Abstract

The grey and white matter volumes are known to reduce with age. This cortical shrinkage is visible on magnetic resonance images and is conveniently identified by the increased volume of cerebrospinal fluid in the sulci between two gyri. Here, we replicated this finding using the UK Biobank dataset and studied the genetic influence on these cortical features of aging. We divided all individuals genetically confirmed of British ancestry into two sub-cohorts (12,162 and 3435 subjects for discovery and replication samples, respectively). We found that the heritability of the sulcal opening ranges from 15 to 45% (SE = 4.8%). We identified 4 new loci that contribute to this opening, including one that also affects the sulci grey matter thickness. We identified the most significant variant (rs864736) on this locus as being an expression quantitative trait locus (eQTL) for the KCNK2 gene. This gene regulates the immune-cell into the central nervous system (CNS) and controls the CNS inflammation, which is implicated in cortical atrophy and cognitive decline. These results expand our knowledge of the genetic contribution to cortical shrinking and promote further investigation into these variants and genes in pathological context such as Alzheimer's disease in which brain shrinkage is a key biomarker.

摘要

已知灰质和白质体积会随着年龄的增长而减少。这种皮质萎缩在磁共振图像上可见,通过脑沟之间脑脊液体积的增加方便地识别。在这里,我们使用 UK Biobank 数据集复制了这一发现,并研究了遗传对这些衰老皮质特征的影响。我们将所有经基因确认具有英国血统的个体分为两个亚组(发现和复制样本分别为 12162 人和 3435 人)。我们发现,脑沟开口的遗传率在 15%到 45%之间(SE = 4.8%)。我们发现了 4 个新的基因座,这些基因座与脑沟开口有关,其中一个基因座也影响脑沟的灰质厚度。我们确定了这个基因座上最显著的变异(rs864736)是 KCNK2 基因的表达数量性状基因座(eQTL)。该基因调节免疫细胞进入中枢神经系统(CNS),并控制 CNS 炎症,这与皮质萎缩和认知能力下降有关。这些结果扩展了我们对皮质萎缩遗传贡献的认识,并促使进一步研究这些变体和基因在病理环境中的作用,如阿尔茨海默病,其中脑萎缩是一个关键的生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c272/6420450/84328cfb7f2d/429_2018_1808_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c272/6420450/5513cec23ee6/429_2018_1808_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c272/6420450/3a11866985f5/429_2018_1808_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c272/6420450/dac7b37e84dc/429_2018_1808_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c272/6420450/84328cfb7f2d/429_2018_1808_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c272/6420450/5513cec23ee6/429_2018_1808_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c272/6420450/3a11866985f5/429_2018_1808_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c272/6420450/dac7b37e84dc/429_2018_1808_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c272/6420450/84328cfb7f2d/429_2018_1808_Fig4_HTML.jpg

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