Raman Harsh, Raman Rosy, Diffey Simon, Qiu Yu, McVittie Brett, Barbulescu Denise Maria, Salisbury Phil Anthony, Marcroft Steve, Delourme Regine
Graham Centre for Agricultural Innovation, Wagga Wagga Agricultural Institute, Wagga Wagga, NSW, Australia.
Centre for Bioinformatics and Biometrics, University of Wollongong, Wollongong, NSW, Australia.
Front Plant Sci. 2018 Nov 23;9:1622. doi: 10.3389/fpls.2018.01622. eCollection 2018.
The hemibiotrophic fungus, is the most devastating pathogen, causing blackleg disease in canola ( L). To study the genomic regions involved in quantitative resistance (QR), 259-276 DH lines from Darmor-/Yudal (DYDH) population were assessed for resistance to blackleg under shade house and field conditions across 3 years. In different experiments, the broad sense heritability varied from 43 to 95%. A total of 27 significant quantitative trait loci (QTL) for QR were detected on 12 chromosomes and explained between 2.14 and 10.13% of the genotypic variance. Of the significant QTL, at least seven were repeatedly detected across different experiments on chromosomes A02, A07, A09, A10, C01, and C09. Resistance alleles were mainly contributed by 'Darmor-' but 'Yudal' also contributed few of them. Our results suggest that plant maturity and plant height may have a pleiotropic effect on QR in our conditions. We confirmed that which is present in 'Darmor-' is not effective to confer resistance in our Australian field conditions. Comparative mapping showed that several genes coding for nucleotide-binding leucine-rich repeat (LRR) receptors map in close proximity (within 200 Kb) of the significant trait-marker associations on the reference 'Darmor-' genome assembly. More importantly, eight significant QTL regions were detected across diverse growing environments: Australia, France, and United Kingdom. These stable QTL identified herein can be utilized for enhancing QR in elite canola germplasm via marker- assisted or genomic selection strategies.
半活体营养型真菌是最具破坏性的病原体,可导致油菜(甘蓝型油菜)黑胫病。为了研究参与数量抗性(QR)的基因组区域,对来自Darmor-/Yudal(DYDH)群体的259 - 276个双单倍体(DH)系在3年时间里于遮荫棚和田间条件下进行了黑胫病抗性评估。在不同实验中,广义遗传力在43%至95%之间变化。共在12条染色体上检测到27个与数量抗性相关的显著数量性状位点(QTL),它们解释了2.14%至10.13%的基因型变异。在这些显著的QTL中,至少有7个在不同实验中于A02、A07、A09、A10、C01和C09染色体上被重复检测到。抗性等位基因主要由“Darmor-”贡献,但“Yudal”也贡献了少数几个。我们的结果表明,在我们的条件下,植株成熟度和株高可能对数量抗性有 pleiotropic 效应。我们证实,存在于“Darmor-”中的[此处原文缺失相关内容]在我们澳大利亚的田间条件下并不能有效赋予抗性。比较图谱显示,几个编码核苷酸结合富含亮氨酸重复序列(LRR)受体的基因在参考“Darmor-”基因组组装上的显著性状 - 标记关联附近(200 Kb内)定位。更重要的是,在不同的生长环境(澳大利亚、法国和英国)中检测到了8个显著的QTL区域。本文鉴定出的这些稳定QTL可通过标记辅助或基因组选择策略用于增强优良油菜种质的数量抗性。